Table of Contents Year 2016

Volume 1

carl: a likelihood-free inference toolbox
Published 11-05-2016
10.21105/joss.00011
Application Skeleton: Generating Synthetic Applications for Infrastructure Research
Published 11-05-2016
10.21105/joss.00017
mst_clustering: Clustering via Euclidean Minimum Spanning Trees
Published 16-05-2016
10.21105/joss.00012
pyuca: a Python implementation of the Unicode Collation Algorithm
Published 18-05-2016
10.21105/joss.00021
Xenomapper: Mapping reads in a mixed species context
Published 22-05-2016
10.21105/joss.00018
R3D2: Relativistic Reactive Riemann problem solver for Deflagrations and Detonations
Published 27-05-2016
10.21105/joss.00016
Representation and Manipulation of Genomic Tuples in R
Published 28-05-2016
10.21105/joss.00020
Scowl: a Scala DSL for programming with the OWL API
Published 31-05-2016
10.21105/joss.00023
corner.py: Scatterplot matrices in Python
Published 08-06-2016
10.21105/joss.00024
Armadillo: a template-based C++ library for linear algebra
Published 10-06-2016
10.21105/joss.00026
GeneNetwork: framework for web-based genetics
Published 17-06-2016
10.21105/joss.00025
Git-RDM: A research data management plugin for the Git version control system
Published 19-06-2016
10.21105/joss.00029
Phylogemetric: A Python library for calculating phylogenetic network metrics
Published 20-06-2016
10.21105/joss.00028
Prism: Multiple spline regression with regularization, dimensionality reduction, and feature selection
Published 01-07-2016
10.21105/joss.00031
tidytext: Text Mining and Analysis Using Tidy Data Principles in R
Published 11-07-2016
10.21105/joss.00037
gwdegree: Improving interpretation of geometrically-weighted degree estimates in exponential random graph models
Published 13-07-2016
10.21105/joss.00036
RSMTool: collection of tools building and evaluating automated scoring models
Published 28-07-2016
10.21105/joss.00033
Gillespie.jl: Stochastic Simulation Algorithm in Julia
Published 30-07-2016
10.21105/joss.00042
PsychoPhysioCollector: A Smartphone-Based Data Collection App for Psychophysiological Research
Published 04-08-2016
10.21105/joss.00040
Advanced viewshed analysis: a Quantum GIS plug-in for the analysis of visual landscapes
Published 09-08-2016
10.21105/joss.00032
PyGBe: Python, GPUs and Boundary elements for biomolecular electrostatics
Published 18-08-2016
10.21105/joss.00043
rdefra: Interact with the UK AIR Pollution Database from DEFRA
Published 28-08-2016
10.21105/joss.00051
ChainConsumer
Published 30-08-2016
10.21105/joss.00045
cartography: Create and Integrate Maps in your R Workflow
Published 30-08-2016
10.21105/joss.00054
Osprey: Hyperparameter Optimization for Machine Learning
Published 07-09-2016
10.21105/joss.00034
PsychoPhysioPipeline: A Processing and Analysis Pipeline for Psychophysiological Research
Published 09-09-2016
10.21105/joss.00041
sourmash: a library for MinHash sketching of DNA
Published 14-09-2016
10.21105/joss.00027
ezknitr: Avoid the Typical Working Directory Pain When Using 'knitr'
Published 20-09-2016
10.21105/joss.00075
hebbRNN: A Reward-Modulated Hebbian Learning Rule for Recurrent Neural Networks
Published 23-09-2016
10.21105/joss.00060
RcppCNPy: Read-Write Support for NumPy Files in R
Published 25-09-2016
10.21105/joss.00055
Python Active-subspaces Utility Library
Published 29-09-2016
10.21105/joss.00079
SEP: Source Extractor as a library
Published 05-10-2016
10.21105/joss.00058
GFF3toEMBL: Preparing annotated assemblies for submission to EMBL
Published 06-10-2016
10.21105/joss.00080
pygtc: beautiful parameter covariance plots (aka. Giant Triangle Confusograms)
Published 08-10-2016
10.21105/joss.00046
rintrojs: A Wrapper for the Intro.js Library
Published 11-10-2016
10.21105/joss.00063
LAS: an integrated language analysis tool for multiple languages
Published 12-10-2016
10.21105/joss.00035
edarf: Exploratory Data Analysis using Random Forests
Published 23-10-2016
10.21105/joss.00092
VCFPy: a Python 3 library with good support for both reading and writing VCF
Published 25-10-2016
10.21105/joss.00085
Habfuzz: A tool to calculate the instream hydraulic habitat suitability using fuzzy logic and fuzzy Bayesian inference
Published 27-10-2016
10.21105/joss.00082
Correlation Trait Loci (CTL) mapping: phenotype network inference subject to genotype
Published 30-10-2016
10.21105/joss.00087
rucrdtw: Fast time series subsequence search in R
Published 07-11-2016
10.21105/joss.00100
plater: Read, Tidy, and Display Data from Microtiter Plates
Published 08-11-2016
10.21105/joss.00106
xpecgen: A program to calculate x-ray spectra generated in tungsten anodes
Published 09-11-2016
10.21105/joss.00062
RAILS and Cobbler: Scaffolding and automated finishing of draft genomes using long DNA sequences
Published 17-11-2016
10.21105/joss.00116
DoSOCS: A System for SPDX 2.0 Document Creation and Storage
Published 20-11-2016
10.21105/joss.00038
Eclipse Golo
Published 01-12-2016
10.21105/joss.00093
popeye: a population receptive field estimation tool
Published 01-12-2016
10.21105/joss.00103
ReproZip: The Reproducibility Packer
Published 01-12-2016
10.21105/joss.00107
resampy: efficient sample rate conversion in Python
Published 05-12-2016
10.21105/joss.00125
finreportr: Financial Data from U.S. Securities and Exchange Commission
Published 05-12-2016
10.21105/joss.00119
Displaying papers 1 - 50 of 57 in total

Table of Contents
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ISSN 2475-9066