The Journal of Open Source Software

A developer friendly journal for research software packages.

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edoddridge / aronnax

Aronnax is a highly idealised model for simulating large-scale (100-1000km) flows in the ocean. Aronnax is intended for theoretical and empirical oceanographers, as a (relatively) fast and...

DOI pending

AdeBytes / PyLogFinder_Package.git

PyLogFinder is a python program for automating the process of analyzing a large database of LAS files and selecting the LAS files that contain specific geophysical logs needed. PyLogFinder uses a...

DOI pending

AdeBytes / QPFA_Package.git

QPFA is a program for estimating the critical moment and associated uncertainty in a petroleum system within a probabilistic framework.

DOI pending

warrenlr / xmatchview

Here we present xmatchview and xmatchview-conifer, tools for visualizing DNA sequence synteny.

DOI pending

scikit-learn-contrib / categorical-encoding

Category encoders is a scikit-learn-contrib package containing different transformers for encoding categorical data as numeric. This includes support for commonly used encoders such as one-hot or...

DOI pending

bjodah / pyodesys

pyodesys provides a straightforward way of numerically integrating systems of ordinary differential equations (initial value problems).
It unifies the interface of several libraries for performing...

DOI pending

sjspielman / phyphy

phyphy is a Python package aimed to facilitate and simplify usage of the popular bioinformatics software platform, HyPhy, in two primary ways: i) execute standard HyPhy analyses directly within the...

DOI pending

j-faria / kima

kima is a package for the detection and characterization of exoplanets in radial-velocity data.
It uses the Diffusive Nested Sampling algorithm to estimate the posterior distribution of the...

DOI pending

BIOS-IMASL / chesweet

CheSweet: a Python module for accurate and fast computation of chemical shifts and torsional angles in glycans.

DOI pending

gibbonCode / GIBBON

GIBBON is an open-source MATLABĀ® toolbox providing a single open-source framework for many aspects of computational (bio)mechanics such as: image segmentation, meshing, boundary conditions...

DOI pending

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