tag:joss.theoj.org,2005:/papers/in/JavaScriptJournal of Open Source Software2024-02-29T21:34:54ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/51272024-02-29T21:34:54Z2024-03-01T00:00:22ZCoSApp: a Python library to create, simulate and design complex systems.acceptedv0.15.32024-01-23 12:22:22 UTC942024-02-29 21:34:54 UTC920246292ÉtienneLacSafran Tech, Digital Sciences & Technologies Department, France0000-0002-6964-0044GuySpiegeleertwiinIT, France0009-0005-9828-0550AdrienDelsalletwiinIT, France0009-0001-8126-4045FrédéricCollonvalWebScIT, France0009-0000-3579-3424Duc-TrungLêQuantStack, France0009-0000-0415-8399MathiasMalandainInria centre at Rennes University, France0000-0001-9740-491410.21105/joss.06292https://doi.org/10.5281/zenodo.10722403Python, C#, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06292.pdfMultidisciplinary Design Analysis and Optimization, System designtag:joss.theoj.org,2005:Paper/50422024-02-09T13:51:24Z2024-02-10T00:01:17Zelsa: an elegant framework for tomographic reconstructionaccepted0.8.02023-12-20 14:16:50 UTC942024-02-09 13:51:24 UTC920246174DavidFrankDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0009-0006-4989-2144JonasJeltenDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0002-5167-2419TobiasLasserDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0001-5669-920X10.21105/joss.06174https://doi.org/10.5281/zenodo.10609174Python, C++, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06174.pdfComputed Tomography, X-ray Computed Tomography, Tomography, Tomographic Reconstruction, Inverse Problems, Software Frameworktag:joss.theoj.org,2005:Paper/50552024-02-07T21:38:40Z2024-02-12T12:12:32ZHistoJS: Web-Based Analytical Tool for Advancing Multiplexed Imagesacceptedv1.0.02023-12-31 23:10:45 UTC942024-02-07 21:38:40 UTC920246317MohamedMasoudTri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, United States of America0000-0002-5365-242XDavidGutmanDepartment of Pathology, Emory University School of Medicine, Atlanta, United States of America0000-0002-1386-8701SergeyPlisTri-institutional Center for Translational Research in Neuroimaging and Data Science (TReNDS), Georgia State University, Georgia Institute of Technology, Emory University, Atlanta, United States of America, Department of Computer Science, Georgia State University, Atlanta, United States of America0000-0003-0040-036510.21105/joss.06317https://doi.org/10.5281/zenodo.10626533Python, JavaScript, PHPhttps://joss.theoj.org/papers/10.21105/joss.06317.pdfVisualization, Web Machine Learning, Multiplexed Images, Spatial Biology, Single Celltag:joss.theoj.org,2005:Paper/45432024-01-16T16:18:16Z2024-01-17T00:00:43ZSPICY: a Python toolbox for meshless assimilation from image velocimetry using radial basis functionsacceptedv1.0.02023-06-13 17:15:19 UTC932024-01-16 16:18:16 UTC920245749PietroSperottoThe von Karman Institute for Fluid Dynamics (VKI), Rhode St. Genese, 1640, Belgium0000-0001-9412-0828M.RatzThe von Karman Institute for Fluid Dynamics (VKI), Rhode St. Genese, 1640, Belgium0009-0008-8491-8367M.A.MendezThe von Karman Institute for Fluid Dynamics (VKI), Rhode St. Genese, 1640, Belgium0000-0002-1115-218710.21105/joss.05749https://doi.org/10.5281/zenodo.10473329JavaScript, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05749.pdfPython, Radial Basis Functions, Super resolution in Image Velocimetry, Data Assimilation in Image Velocimetry, Poisson Equationtag:joss.theoj.org,2005:Paper/47092024-01-11T21:50:53Z2024-01-12T00:01:08ZOpen-Source Pattern Creation Tool for Medical Extended Reality Image Quality Assessmentacceptedv1.02023-08-18 18:32:57 UTC932024-01-11 21:50:53 UTC920246021BrendanCollinsDivision of Imaging, Diagnostics and Software Reliability, Office of Science and Engineering Laboratories, Center for Devices and Radiological Health, U. S. Food and Drug Administration, Silver Spring, MD, United States, Department of Computer Science, University of Maryland, College Park, MD, United States0000-0002-1529-5900RyanBeamsDivision of Imaging, Diagnostics and Software Reliability, Office of Science and Engineering Laboratories, Center for Devices and Radiological Health, U. S. Food and Drug Administration, Silver Spring, MD, United States0000-0003-2592-6064MiguelLagoDivision of Imaging, Diagnostics and Software Reliability, Office of Science and Engineering Laboratories, Center for Devices and Radiological Health, U. S. Food and Drug Administration, Silver Spring, MD, United States0000-0002-7829-957010.21105/joss.06021https://doi.org/10.5281/zenodo.10463335JavaScript, Less, SCSShttps://joss.theoj.org/papers/10.21105/joss.06021.pdfJavascript, HTML, CSS, WebXR, A-Frame, Virtual Reality, VR, Image Quality, Pattern Creationtag:joss.theoj.org,2005:Paper/44422024-01-07T20:42:23Z2024-01-08T00:00:33ZDataScribe: An Omeka S module for structured data transcriptionacceptedv1.1.02023-04-19 17:22:03 UTC932024-01-07 20:42:23 UTC920245661JessicaM.OtisRoy Rosenzweig Center for History and New Media, George Mason University, USA0000-0001-5519-8331JamesSafleyDigital ScholarMeganBrettJefferson Library, Monticello0000-0002-7474-7196LincolnMullenRoy Rosenzweig Center for History and New Media, George Mason University, USA0000-0001-5103-691710.21105/joss.05661https://doi.org/10.5281/zenodo.10379756PHP, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05661.pdfOmeka, digital humanities, transcriptiontag:joss.theoj.org,2005:Paper/43102023-10-24T14:44:56Z2024-02-07T13:20:12Zgesel: a JavaScript package for client-side gene set enrichmentaccepted0.2.32023-03-15 18:20:39 UTC902023-10-24 14:44:56 UTC820235777AaronTin LongLunGenentech Inc., South San Francisco, United States of America0000-0002-3564-4813JayaramKancherlaGenentech Inc., South San Francisco, United States of America0000-0001-5855-503110.21105/joss.05777https://doi.org/10.5281/zenodo.10032294JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05777.pdfbioinformaticstag:joss.theoj.org,2005:Paper/45232023-10-03T12:45:56Z2023-10-04T00:00:43ZPort: A software tool for digital data donationacceptedv1.0.12023-06-03 10:23:31 UTC902023-10-03 12:45:56 UTC820235596LauraBoeschotenUtrecht University, The Netherlands0000-0002-3536-0474NiekC.de SchipperUniversity of Amsterdam, The Netherlands0000-0002-8462-9791AdriënneM.MendrikEyra Leap B.V., the Netherlands0000-0001-6631-7068Emielvan der VeenEyra Leap B.V., the Netherlands0000-0002-4895-6584BellaStruminskayaUtrecht University, The Netherlands0000-0002-5944-8163HeleenJanssenUniversity of Amsterdam, The Netherlands0000-0002-2785-5741TheoAraujoUniversity of Amsterdam, The Netherlands0000-0002-4633-933910.21105/joss.05596https://doi.org/10.5281/zenodo.8401806JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05596.pdfdata donation, digital trace data, local processing, pyodide, elixirtag:joss.theoj.org,2005:Paper/42862023-10-01T20:53:57Z2023-10-02T07:50:01ZRosalution: Supporting data accessibility, integration, curation, interoperability, and reuse for precision animal modelingaccepted0.6.02023-03-07 19:18:39 UTC902023-10-01 20:53:57 UTC820235443AngelinaE.Uno-AntonisonCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-4631-9135RababFatimaCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-3739-6331JamesSchererCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-4272-2082AlexanderMossCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0001-5112-0270DonnaBrownCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-8805-7225AleksandraFoksinskaHugh Kaul Precision Medicine Institute, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-1035-3294ManavalanGajapathyCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-8606-0113ElizabethJ.WilkDepartment of Cell, Developmental and Integrative Biology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-7078-1215BrittanyN.LasseigneDepartment of Cell, Developmental and Integrative Biology, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0002-1642-8904ElizabethWortheyCenter for Computational Genomics and Data Sciences, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Genetics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America, Department of Pediatrics, Heersink School of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America0000-0003-4083-776410.21105/joss.05443https://doi.org/10.5281/zenodo.8380641Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05443.pdfanimal modeling, rare disease, diagnosis, genomics, phenotype, python, javascript, web applicationtag:joss.theoj.org,2005:Paper/40282023-09-29T15:46:58Z2023-09-30T07:21:05ZTrash AI: A Web GUI for Serverless Computer Vision Analysis of Images of Trashaccepted1.02022-11-28 09:06:07 UTC892023-09-29 15:46:58 UTC820235136WinCowgerMoore Institute for Plastic Pollution Research, USA0000-0001-9226-3104StevenHollingsworthCode for Sacramento and Open Fresno, USADayFeyCode for Sacramento and Open Fresno, USAMaryC.NorrisCode for Sacramento and Open Fresno, USAWalterYuCalifornia Department of Transportation, USAKristiinaKergeLet's Do It Foundation, EstoniaKrisHaamerLet's Do It Foundation, EstoniaGinaDuranteCode for Sacramento and Open Fresno, USABriandaHernandezCode for Sacramento and Open Fresno, USA10.21105/joss.05136https://doi.org/10.5281/zenodo.8384126Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05136.pdftensorflow.js, IndexDB, Plastic Pollution, Trash, Litter, AI, Image Classification, Serverless, vue, vuetify, vite, pinia