stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow Submitted 29 May 2025 • Published 05 June 2026
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Authors

Arzoo Patel (0009-0007-9033-5785), Mohit Thakur (0009-0003-2927-6051), Justin Kim (0000-0001-8745-9612), Peyton Smith (0000-0002-5446-5298), Lee S. Katz (0000-0002-2533-9161), Curtis Kapsak (0000-0002-8735-1190), Jessica Chen (0000-0002-9320-6774)

Citation

Patel et al., (2026). stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria. Journal of Open Source Software, 11(122), 9695, https://doi.org/10.21105/joss.09695

@article{Patel2026, doi = {10.21105/joss.09695}, url = {https://doi.org/10.21105/joss.09695}, year = {2026}, publisher = {The Open Journal}, volume = {11}, number = {122}, pages = {9695}, author = {Patel, Arzoo and Thakur, Mohit and Kim, Justin and Smith, Peyton and Katz, Lee S. and Kapsak, Curtis and Chen, Jessica}, title = {stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria}, journal = {Journal of Open Source Software} }
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nextflow bioinformatics genomics bacteria assembly nanopore long-reads quality control filtering downsampling ont nf-core style

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ISSN 2475-9066