JOSS Papers: bacteria

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4066
 Published Papers
3634
 Active Papers
432
published Published about 1 month ago

stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow
@mohitmthakur
10.21105/joss.09695
published Published 7 months ago

Ziplign: a simple-to-use interactive tool to compare bacterial genomes

GDScript
@martinghunt
10.21105/joss.09004
published Published 12 months ago

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Python
@ira-zibbu
10.21105/joss.08065
published Published over 2 years ago

Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance

Python Nextflow
@jhayer
10.21105/joss.05397
published Published over 7 years ago

TipToft: detecting plasmids contained in uncorrected long read sequencing data

Python
@andrewjpage
10.21105/joss.01021
published Published about 9 years ago

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs.

Python
@andrewjpage
10.21105/joss.00243
published Published over 9 years ago

Multilocus sequence typing by blast from de novo assemblies against PubMLST

Perl
@andrewjpage
10.21105/joss.00118
Displaying 7 papers

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ISSN 2475-9066