JOSS Papers: bacteria

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3293
 Published Papers
2909
 Active Papers
384
published Published over 1 year ago

Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance

Python Nextflow
@jhayer
10.21105/joss.05397
published Published about 6 years ago

TipToft: detecting plasmids contained in uncorrected long read sequencing data

Python
@andrewjpage
10.21105/joss.01021
published Published almost 8 years ago

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs.

Python
@andrewjpage
10.21105/joss.00243
published Published over 8 years ago

Multilocus sequence typing by blast from de novo assemblies against PubMLST

Perl
@andrewjpage
10.21105/joss.00118
Displaying 4 papers

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ISSN 2475-9066