JOSS Papers: bacteria

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3889
 Published Papers
3298
 Active Papers
591
published Published 4 months ago

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Python
@ira-zibbu
10.21105/joss.08065
published Published about 2 years ago

Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance

Python Nextflow
@jhayer
10.21105/joss.05397
published Published almost 7 years ago

TipToft: detecting plasmids contained in uncorrected long read sequencing data

Python
@andrewjpage
10.21105/joss.01021
published Published over 8 years ago

SaffronTree: Fast, reference-free pseudo-phylogenomic trees from reads or contigs.

Python
@andrewjpage
10.21105/joss.00243
published Published about 9 years ago

Multilocus sequence typing by blast from de novo assemblies against PubMLST

Perl
@andrewjpage
10.21105/joss.00118
Displaying 5 papers

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ISSN 2475-9066