JOSS Papers: nextflow

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4071
 Published Papers
3655
 Active Papers
416
published Published 2 months ago

stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow
@mohitmthakur
10.21105/joss.09695
published Published 5 months ago

TarGene: A Nextflow pipeline for the estimation of genetic effects on human traits via semi-parametric methods.

Nextflow Julia
@olivierlabayle
10.21105/joss.09603
published Published 5 months ago

nf-core/cutandrun: A Nextflow pipeline for the analysis of CUT&RUN, CUT&Tag and TIP-seq datasets

Awk Python Perl Nextflow
@tamara-hodgetts
10.21105/joss.09672
published Published about 1 year ago

target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files.

Python Nextflow Groovy
@abhi18av
10.21105/joss.07608
published Published over 1 year ago

AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment

Nextflow
@Juke34
10.21105/joss.07545
published Published almost 3 years ago

Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance

Python Nextflow
@jhayer
10.21105/joss.05397
published Published over 5 years ago

nf-gwas-pipeline: A Nextflow Genome-Wide Association Study Pipeline

R Python
@ZeyuanSong
10.21105/joss.02957
Displaying 7 papers

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ISSN 2475-9066