JOSS Papers: genomics

All Papers
1884
 Published Papers
1673
 Active Papers
211
published Published about 2 months ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published 5 months ago

Rasusa: Randomly subsample sequencing reads to a specified coverage

Rust
@mbhall88
10.21105/joss.03941
published Published 5 months ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics

R
@chrisamiller
10.21105/joss.03722
published Published 7 months ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published 8 months ago

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets

Python Jupyter Notebook
@alexismhill3
10.21105/joss.03678
published Published 9 months ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
published Published about 1 year ago

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

Perl Python Prolog
@lskatz
10.21105/joss.02334
published Published over 1 year ago

Generating fragment density plots in R/Bioconductor with VplotR

R
@js2264
10.21105/joss.03009
published Published over 1 year ago

REGENS: an open source Python package for simulating realistic autosomal genotypes

Python
@greggj2016
10.21105/joss.02743
published Published over 1 year ago

nf-gwas-pipeline: A Nextflow Genome-Wide Association Study Pipeline

R Python
@ZeyuanSong
10.21105/joss.02957
Displaying papers 1 - 10 of 48 in total

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