JOSS Papers: genomics

All Papers
1707
 Published Papers
1519
 Active Papers
188
published Published about 2 months ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published 3 months ago

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets

Python Jupyter Notebook
@alexismhill3
10.21105/joss.03678
published Published 3 months ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
published Published 9 months ago

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

Perl Python Prolog
@lskatz
10.21105/joss.02334
published Published 10 months ago

Generating fragment density plots in R/Bioconductor with VplotR

R
@js2264
10.21105/joss.03009
published Published 11 months ago

REGENS: an open source Python package for simulating realistic autosomal genotypes

Python
@greggj2016
10.21105/joss.02743
published Published 11 months ago

nf-gwas-pipeline: A Nextflow Genome-Wide Association Study Pipeline

R Python
@ZeyuanSong
10.21105/joss.02957
published Published about 1 year ago

zalpha: an R package for the identification of regions of the genome under selection

R
@chorscroft
10.21105/joss.02638
published Published over 1 year ago

CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies

R
@ramadatta
10.21105/joss.02473
published Published over 1 year ago

cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files

Python
@lincoln-harris
10.21105/joss.02432
Displaying papers 1 - 10 of 45 in total

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