JOSS Papers: genomics

All Papers
805
 Published Papers
697
 Active Papers
108
published Published about 2 months ago

The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq

R XQuery
@ShixiangWang
10.21105/joss.01627
published Published about 2 months ago

ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes

Java
@urmi-21
10.21105/joss.01589
published Published 2 months ago

CGIMP: Real-time exploration and covariate projection for self-organizing map datasets

Python JavaScript
@adadiehl
10.21105/joss.01520
published Published 5 months ago

rGUIDANCE – alignment confidence score computation in R

R C++
@FranzKrah
10.21105/joss.01350
published Published 5 months ago

WGS2NCBI - Toolkit for preparing genomes for submission to NCBI

Perl Scala
@rvosa
10.21105/joss.01364
published Published 7 months ago

Bedparse: feature extraction from BED files

Python
@tleonardi
10.21105/joss.01228
published Published 7 months ago

mitolina: MITOchondrial LINeage Analysis

R C++
@mikldk
10.21105/joss.01266
published Published 8 months ago

GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats

Perl C++ Python
@edawson
10.21105/joss.01083
published Published about 1 year ago

BAMnostic: an OS-agnostic toolkit for genomic sequence analysis

Python
@betteridiot
10.21105/joss.00826
published Published over 1 year ago

reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome

Perl R
@nterhoeven
10.21105/joss.00527
Displaying paper 1 - 10 of 23 in total

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