JOSS Papers: genomics

All Papers
2411
 Published Papers
2161
 Active Papers
250
published Published 5 months ago

mutyper: assigning and summarizing mutation types for analyzing germline mutation spectra

Python
@WSDeWitt
10.21105/joss.05227
published Published 9 months ago

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

M4 C
@cagret
10.21105/joss.04363
published Published 10 months ago

Corekaburra: pan-genome post-processing using core gene synteny

Python Dockerfile
@milnus
10.21105/joss.04910
published Published 11 months ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R
@vlad0x00
10.21105/joss.04720
published Published 12 months ago

VPsearch: fast exact sequence similarity search for genomic sequences

Dockerfile Python Cython C++
@jvkersch
10.21105/joss.04236
published Published about 1 year ago

rTASSEL: An R interface to TASSEL for analyzing genomic diversity

R
@btmonier
10.21105/joss.04530
published Published about 1 year ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Dockerfile Python
@milnus
10.21105/joss.04369
published Published over 1 year ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published over 1 year ago

Rasusa: Randomly subsample sequencing reads to a specified coverage

Rust
@mbhall88
10.21105/joss.03941
published Published over 1 year ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics

R
@chrisamiller
10.21105/joss.03722
Displaying papers 1 - 10 of 55 in total

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ISSN 2475-9066