JOSS Papers: genomics

All Papers
2180
 Published Papers
1951
 Active Papers
229
published Published 3 months ago

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

M4 C
@cagret
10.21105/joss.04363
published Published 4 months ago

Corekaburra: pan-genome post-processing using core gene synteny

Python Dockerfile
@milnus
10.21105/joss.04910
published Published 5 months ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R
@vlad0x00
10.21105/joss.04720
published Published 6 months ago

VPsearch: fast exact sequence similarity search for genomic sequences

Dockerfile Python Cython C++
@jvkersch
10.21105/joss.04236
published Published 8 months ago

rTASSEL: An R interface to TASSEL for analyzing genomic diversity

R
@btmonier
10.21105/joss.04530
published Published 9 months ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Dockerfile Python
@milnus
10.21105/joss.04369
published Published 11 months ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published about 1 year ago

Rasusa: Randomly subsample sequencing reads to a specified coverage

Rust
@mbhall88
10.21105/joss.03941
published Published about 1 year ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics

R
@chrisamiller
10.21105/joss.03722
published Published over 1 year ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
Displaying papers 1 - 10 of 54 in total

Journal of Open Source Software is an affiliate of the Open Source Inititative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066