JOSS Papers: genomics

All Papers
2042
 Published Papers
1832
 Active Papers
210
published Published 26 days ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R
@vlad0x00
10.21105/joss.04720
published Published about 2 months ago

VPsearch: fast exact sequence similarity search for genomic sequences

Dockerfile Python Cython C++
@jvkersch
10.21105/joss.04236
published Published 4 months ago

rTASSEL: An R interface to TASSEL for analyzing genomic diversity

R
@btmonier
10.21105/joss.04530
published Published 5 months ago

Magphi: Sequence extraction tool from FASTA and GFF3 files using seed pairs

Dockerfile Python
@milnus
10.21105/joss.04369
published Published 7 months ago

ROCK: digital normalization of whole genome sequencing data

M4 C++
@alex2cris
10.21105/joss.03790
published Published 10 months ago

Rasusa: Randomly subsample sequencing reads to a specified coverage

Rust
@mbhall88
10.21105/joss.03941
published Published 10 months ago

Bam-readcount - rapid generation of basepair-resolution sequence metrics

R
@chrisamiller
10.21105/joss.03722
published Published 12 months ago

Nextclade: clade assignment, mutation calling and quality control for viral genomes

Ruby C++
@rneher
10.21105/joss.03773
published Published about 1 year ago

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets

Python Jupyter Notebook
@alexismhill3
10.21105/joss.03678
published Published about 1 year ago

ShUShER: private browser-based placement of sensitive genome samples on phylogenetic trees

Python JavaScript
@amkram
10.21105/joss.03677
Displaying papers 1 - 10 of 52 in total

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