JOSS Papers: genomics

All Papers
975
 Published Papers
885
 Active Papers
90
published Published about 1 month ago

covtobed: a simple and fast tool to extract coverage tracks from BAM files

C++
@telatin
10.21105/joss.02119
published Published about 1 month ago

fqfa: A pure Python package for genomic sequence files

Python
@afrubin
10.21105/joss.02076
published Published 2 months ago

FGTpartitioner: A rapid method for parsimonious delimitation of ancestry breakpoints in large genome-wide SNP datasets

Python
@tkchafin
10.21105/joss.02030
published Published 2 months ago

ReferenceSeeker: rapid determination of appropriate reference genomes

Python
@oschwengers
10.21105/joss.01994
published Published 2 months ago

NCBImeta: efficient and comprehensive metadata retrieval from NCBI databases

Python
@ktmeaton
10.21105/joss.01990
published Published 4 months ago

alignparse: A Python package for parsing complex features from high-throughput long-read sequencing

Python Jupyter Notebook
@jbloom
10.21105/joss.01915
published Published 4 months ago

Mashtree: a rapid comparison of whole genome sequence files

Perl
@lskatz
10.21105/joss.01762
published Published 4 months ago

Bedtoolsr: An R package for genomic data analysis and manipulation

R Python
@dphansti
10.21105/joss.01742
published Published 8 months ago

The UCSCXenaTools R package: a toolkit for accessing genomics data from UCSC Xena platform, from cancer multi-omics to single-cell RNA-seq

R XQuery
@ShixiangWang
10.21105/joss.01627
published Published 8 months ago

ORIS: An interactive software tool for prediction of replication origin in prokaryotic genomes

Java
@urmi-21
10.21105/joss.01589
Displaying papers 1 - 10 of 31 in total

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ISSN 2475-9066