published Published 3 days ago
Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases
Dockerfile Python
published Published 3 months ago
RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes
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Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy
Dockerfile Python
published Published 5 months ago
btllib: A C++ library with Python interface for efficient genomic sequence processing
Python C R
published Published 5 months ago
basilisk: a Bioconductor package for managing Python environments
R Python
published Published 6 months ago
VPsearch: fast exact sequence similarity search for genomic sequences
Dockerfile Python Cython C++
published Published 11 months ago
Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes
Python C Cython
published Published about 1 year ago