JOSS Papers: bioinformatics

Published Papers

published Published 3 days ago

Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases

Dockerfile Python

10.21105/joss.05289

published Published 3 months ago

RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

M4 C

10.21105/joss.04363

published Published 4 months ago

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy

Dockerfile Python

10.21105/joss.04755

published Published 5 months ago

btllib: A C++ library with Python interface for efficient genomic sequence processing

Python C R

10.21105/joss.04720

published Published 5 months ago

basilisk: a Bioconductor package for managing Python environments

R Python

10.21105/joss.04742

published Published 6 months ago

VPsearch: fast exact sequence similarity search for genomic sequences

Dockerfile Python Cython C++

10.21105/joss.04236

published Published 7 months ago

PCRedux: A Quantitative PCR Machine Learning Toolkit

R JavaScript

10.21105/joss.04407

published Published 10 months ago

MitoHEAR: an R package for the estimation and downstream statistical analysis of the mitochondrial DNA heteroplasmy calculated from single-cell datasets

R

@gabrielelubatti

10.21105/joss.04265

published Published 11 months ago

Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes

Python C Cython

10.21105/joss.04296

published Published about 1 year ago

Rainbow: Automated Air-Liquid Interface Cell Culture Analysis Using Deep Optical Flow

Python Jupyter Notebook

10.21105/joss.04080

Displaying papers 1 - 10 of 66 in total

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