published Published 3 months ago
stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria
Nextflow
published Published over 1 year ago
target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files.
Python Nextflow Groovy
published Published almost 3 years ago
QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data
Jinja Python
published Published over 4 years ago
Nanoq: ultra-fast quality control for nanopore reads
Python Rust
published Published almost 5 years ago
Nextclade: clade assignment, mutation calling and quality control for viral genomes
Ruby C++
published Published over 7 years ago

