JOSS Papers: assembly

All Papers
3470
 Published Papers
3039
 Active Papers
431
published Published 21 days ago

GraphBin-Tk: assembly graph-based metagenomic binning toolkit

Python
@Vini2
10.21105/joss.07713
published Published 7 months ago

Finding and removing introns from RNA-Seq de novo assemblies with IntronSeeker

Perl Python
@SarahMaman
10.21105/joss.06272
published Published 9 months ago

Binette: a fast and accurate bin refinement tool to construct high quality Metagenome Assembled Genomes.

Python
@JeanMainguy
10.21105/joss.06782
published Published over 1 year ago

Shapelets: A Python package implementing shapelet functions and their applications

Python
@nasserma
10.21105/joss.06058
published Published over 4 years ago

CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies

R
@ramadatta
10.21105/joss.02473
published Published almost 5 years ago

scikit-fem: A Python package for finite element assembly

Python
@kinnala
10.21105/joss.02369
published Published over 6 years ago

GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats

Perl C++ Python
@edawson
10.21105/joss.01083
published Published over 7 years ago

reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome

Perl R
@nterhoeven
10.21105/joss.00527
published Published over 7 years ago

chloroExtractor: extraction and assembly of the chloroplast genome from whole genome shotgun data

R Perl
@greatfireball
10.21105/joss.00464
published Published almost 8 years ago

Kindel: indel-aware consensus for nucleotide sequence alignments

Python Jupyter Notebook
@bede
10.21105/joss.00282
Displaying papers 1 - 10 of 14 in total

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ISSN 2475-9066