JOSS Papers: assembly

Published Papers

published Published 2 months ago

parsnip: Streamlined Crystallographic Data Parsing for Assembly Science and Engineering

Python

10.21105/joss.10407

published Published 4 months ago

stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow

10.21105/joss.09695

published Published 9 months ago

assembly-theory: Open, Reproducible Calculation of Assembly Indices

Rust Nix C++ Python Go

10.21105/joss.09318

published Published 10 months ago

PANKEGG: Integrative Visualisation and Comparison of Metagenome-Assembled Genomes Annotation, Taxonomy, and Quality

Python

10.21105/joss.09188

published Published about 1 year ago

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Python

10.21105/joss.08065

published Published over 1 year ago

GraphBin-Tk: assembly graph-based metagenomic binning toolkit

Python

10.21105/joss.07713

published Published almost 2 years ago

Finding and removing introns from RNA-Seq de novo assemblies with IntronSeeker

Perl Python

10.21105/joss.06272

published Published about 2 years ago

Binette: a fast and accurate bin refinement tool to construct high quality Metagenome Assembled Genomes.

Python

10.21105/joss.06782

published Published over 2 years ago

Shapelets: A Python package implementing shapelet functions and their applications

Python

10.21105/joss.06058

published Published about 6 years ago

CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies

R

10.21105/joss.02473

Displaying papers 1 - 10 of 19 in total

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