JOSS Papers: assembly

All Papers
3948
 Published Papers
3410
 Active Papers
538
published Published about 1 month ago

assembly-theory: Open, Reproducible Calculation of Assembly Indices

Rust Nix C++ Python Go
@jdaymude
10.21105/joss.09318
published Published about 2 months ago

PANKEGG: Integrative Visualisation and Comparison of Metagenome-Assembled Genomes Annotation, Taxonomy, and Quality

Python
@RVanDamme
10.21105/joss.09188
published Published 7 months ago

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Python
@ira-zibbu
10.21105/joss.08065
published Published 9 months ago

GraphBin-Tk: assembly graph-based metagenomic binning toolkit

Python
@Vini2
10.21105/joss.07713
published Published about 1 year ago

Finding and removing introns from RNA-Seq de novo assemblies with IntronSeeker

Perl Python
@SarahMaman
10.21105/joss.06272
published Published over 1 year ago

Binette: a fast and accurate bin refinement tool to construct high quality Metagenome Assembled Genomes.

Python
@JeanMainguy
10.21105/joss.06782
published Published almost 2 years ago

Shapelets: A Python package implementing shapelet functions and their applications

Python
@nasserma
10.21105/joss.06058
published Published over 5 years ago

CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies

R
@ramadatta
10.21105/joss.02473
published Published over 5 years ago

scikit-fem: A Python package for finite element assembly

Python
@kinnala
10.21105/joss.02369
published Published about 7 years ago

GFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formats

Perl C++ Python
@edawson
10.21105/joss.01083
Displaying papers 1 - 10 of 17 in total

Journal of Open Source Software is an affiliate of the Open Source Initiative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Table of Contents
Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066