Table of Contents October 2023 Volume 8

Issue 90

PyDGN: a Python Library for Flexible and Reproducible Research on Deep Learning for Graphs
Published 01-10-2023
10.21105/joss.05713
The Generalized Green's function Cluster Expansion: A Python package for simulating polarons
Published 01-10-2023
10.21105/joss.05115
Rosalution: Supporting data accessibility, integration, curation, interoperability, and reuse for precision animal modeling
Published 01-10-2023
10.21105/joss.05443
SMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB)
Published 02-10-2023
10.21105/joss.05563
TensorInference: A Julia package for tensor-based probabilistic inference
Published 03-10-2023
10.21105/joss.05700
Port: A software tool for digital data donation
Published 03-10-2023
10.21105/joss.05596
PurpleCaffeine: tracking of quantum programs and experiments
Published 03-10-2023
10.21105/joss.05673
Time-frequency component of the GreenX library: minimax grids for efficient RPA and GW calculations
Published 03-10-2023
10.21105/joss.05570
ELK: A python package for correcting, analyzing, and diagnosing TESS integrated light curves
Published 03-10-2023
10.21105/joss.05605
epiworldR: Fast Agent-Based Epi Models
Published 03-10-2023
10.21105/joss.05781
NORDic: a Network-Oriented package for the Repurposing of Drugs
Published 05-10-2023
10.21105/joss.05532
OceanBioME.jl: A flexible environment for modelling the coupled interactions between ocean biogeochemistry and physics
Published 05-10-2023
10.21105/joss.05669
Biotrade: A Python package to access and analyse the international trade of bio-based products
Published 05-10-2023
10.21105/joss.05550
brains-py, A framework to support research on energy-efficient unconventional hardware for machine learning
Published 08-10-2023
10.21105/joss.05573
WSKNN - Weighted Session-based K-NN recommender system
Published 09-10-2023
10.21105/joss.05639
BayesO: A Bayesian optimization framework in Python
Published 09-10-2023
10.21105/joss.05320
automata: A Python package for simulating and manipulating automata
Published 09-10-2023
10.21105/joss.05759
PlanetMapper: A Python package for visualising, navigating and mapping Solar System observations
Published 10-10-2023
10.21105/joss.05728
RelativisticDynamics.jl: Relativistic Spin-Orbital Dynamics in Julia
Published 10-10-2023
10.21105/joss.04992
Swiftest: An \textit{N}-body Integrator for Gravitational Systems
Published 10-10-2023
10.21105/joss.05409
lavaanExtra: Convenience Functions for Package lavaan
Published 11-10-2023
10.21105/joss.05701
SIRUS.jl: Interpretable Machine Learning via Rule Extraction
Published 12-10-2023
10.21105/joss.05786
mikecalsetup: an open-source python tool for automatically creating calibration setups of MIKE SHE models in PEST or OSTRICH
Published 12-10-2023
10.21105/joss.05548
chessboard: An R package for creating network connections based on chess moves
Published 13-10-2023
10.21105/joss.05753
NOMAD: A distributed web-based platform for managing materials science research data
Published 15-10-2023
10.21105/joss.05388
OT_Analysis: a software for rich analysis of force curves when probing living cells with optical tweezers
Published 15-10-2023
10.21105/joss.04877
BASICO: A simplified Python interface to COPASI
Published 15-10-2023
10.21105/joss.05553
GridFormat: header-only C++-library for grid file I/O
Published 16-10-2023
10.21105/joss.05778
DPFEHM: a differentiable subsurface physics simulator
Published 18-10-2023
10.21105/joss.04560
Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance
Published 19-10-2023
10.21105/joss.05397
SMART: Spatial Modeling Algorithms for Reactions and Transport
Published 19-10-2023
10.21105/joss.05580
DARTS: The Data Analysis Remote Treatment Service
Published 19-10-2023
10.21105/joss.05562
ReSurfEMG: A Python library for preprocessing and analysis of respiratory EMG.
Published 23-10-2023
10.21105/joss.05251
QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data
Published 23-10-2023
10.21105/joss.05313
PASCal Python: A Principal Axis Strain Calculator
Published 23-10-2023
10.21105/joss.05556
Qiskit Dynamics: A Python package for simulating the time dynamics of quantum systems
Published 24-10-2023
10.21105/joss.05853
gesel: a JavaScript package for client-side gene set enrichment
Published 24-10-2023
10.21105/joss.05777
baseflow: a MATLAB and GNU Octave package for baseflow recession analysis
Published 24-10-2023
10.21105/joss.05492
libscientific: A Powerful C Library for Multivariate Analysis
Published 25-10-2023
10.21105/joss.05420
Curifactory: A research experiment manager
Published 25-10-2023
10.21105/joss.05793
bayes-toolbox: A Python package for Bayesian statistics
Published 27-10-2023
10.21105/joss.05526
UncertainSCI: A Python Package for Noninvasive Parametric Uncertainty Quantification of Simulation Pipelines
Published 27-10-2023
10.21105/joss.04249
JetNet: A Python package for accessing open datasets and benchmarking machine learning methods in high energy physics
Published 30-10-2023
10.21105/joss.05789
SSMSE: An R package for Management Strategy Evaluation with Stock Synthesis Operating Models
Published 30-10-2023
10.21105/joss.04937
UQTestFuns: A Python3 library of uncertainty quantification (UQ) test functions
Published 30-10-2023
10.21105/joss.05671
PeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cycling
Published 31-10-2023
10.21105/joss.05450
Displaying 46 papers

Table of Contents
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ISSN 2475-9066