Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance

Python Nextflow Submitted 10 March 2023 • Published 19 October 2023
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Editor: @fboehm (all papers)
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Authors

Juliette Hayer (0000-0003-4899-9637), Jacques Dainat (0000-0002-6629-0173), Ella Marcy (0009-0002-6000-1665), Anne-Laure Bañuls (0000-0002-2106-8667)

Citation

Hayer et al., (2023). Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance. Journal of Open Source Software, 8(90), 5397, https://doi.org/10.21105/joss.05397

@article{Hayer2023, doi = {10.21105/joss.05397}, url = {https://doi.org/10.21105/joss.05397}, year = {2023}, publisher = {The Open Journal}, volume = {8}, number = {90}, pages = {5397}, author = {Juliette Hayer and Jacques Dainat and Ella Marcy and Anne-Laure Bañuls}, title = {Baargin: a Nextflow workflow for the automatic analysis of bacterial genomics data with a focus on Antimicrobial Resistance}, journal = {Journal of Open Source Software} }
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Whole Genome Shotgun Genomics Long reads sequencing technology Short reads sequencing technology Antimicrobial Resistance Pangenome

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Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

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ISSN 2475-9066