QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data

Jinja Python Submitted 06 March 2023Published 23 October 2023
Review

Editor: @lpantano (all papers)
Reviewers: @brentp (all reviews), @Redmar-van-den-Berg (all reviews)

Authors

Manavalan Gajapathy (0000-0002-8606-0113), Brandon M. Wilk (0000-0002-4110-2324), Elizabeth A. Worthey (0000-0003-4083-7764)

Citation

Gajapathy et al., (2023). QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data. Journal of Open Source Software, 8(90), 5313, https://doi.org/10.21105/joss.05313

@article{Gajapathy2023, doi = {10.21105/joss.05313}, url = {https://doi.org/10.21105/joss.05313}, year = {2023}, publisher = {The Open Journal}, volume = {8}, number = {90}, pages = {5313}, author = {Manavalan Gajapathy and Brandon M. Wilk and Elizabeth A. Worthey}, title = {QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data}, journal = {Journal of Open Source Software} }
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snakemake quality control genome sequencing exome sequencing QC review multiqc singularity bam vcf

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ISSN 2475-9066