JOSS Papers: snakemake

All Papers
3947
 Published Papers
3410
 Active Papers
537
published Published 7 months ago

seabreeze: A Pipeline for Analyzing Structural Variation Between Bacterial Genome Assemblies

Python
@ira-zibbu
10.21105/joss.08065
published Published 10 months ago

cd2es: Converting climate data to energy system input data

Python
@Schneewittchen7001
10.21105/joss.07541
published Published about 1 year ago

Snk: A Snakemake CLI and Workflow Management System

Python
@wytamma
10.21105/joss.07410
published Published almost 2 years ago

Acanthophis: a comprehensive plant hologenomics pipeline

Python
@kdm9
10.21105/joss.06062
published Published almost 2 years ago

Koverage: Read-coverage analysis for massive (meta)genomics datasets

Python
@beardymcjohnface
10.21105/joss.06235
published Published over 2 years ago

QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data

Jinja Python
@ManavalanG
10.21105/joss.05313
published Published over 2 years ago

Snek5000: a new Python framework for Nek5000

Python Nix Jinja
@paugier
10.21105/joss.05586
published Published over 6 years ago

A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments

Python
@mgalland
10.21105/joss.01465
published Published over 8 years ago

'Sequana': a Set of Snakemake NGS pipelines

Jupyter Notebook Python
@cokelaer
10.21105/joss.00352
Displaying 9 papers

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ISSN 2475-9066