khmer release v2.1: software for biological sequence analysis

Python C++ Roff Submitted 26 May 2017Published 03 July 2017

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Daniel Standage (0000-0003-0342-8531), Ali Aliyari (0000-0003-0925-4886), Lisa J. Cohen (0000-0002-3600-7218), Michael R. Crusoe (0000-0002-2961-9670), Tim Head (0000-0003-0931-3698), Luiz Irber (0000-0003-4371-9659), Shannon Ek Joslin (0000-0001-5470-1193), N. B. Kingsley (0000-0001-8574-8592), Kevin D. Murray (0000-0002-2466-1917), Russell Neches (0000-0002-2055-8381), Camille Scott (0000-0001-8822-8779), Ryan Shean, Sascha Steinbiss (0000-0002-2151-0574), Cait Sydney, C. Titus Brown (0000-0001-6001-2677)


Standage et al, (2017), khmer release v2.1: software for biological sequence analysis, Journal of Open Source Software, 2(15), 272, doi:10.21105/joss.00272

@article{Standage2017, doi = {10.21105/joss.00272}, url = {}, year = {2017}, publisher = {The Open Journal}, volume = {2}, number = {15}, pages = {272}, author = {Daniel Standage and Ali Aliyari and Lisa J. Cohen and Michael R. Crusoe and Tim Head and Luiz Irber and Shannon Ek Joslin and N. B. Kingsley and Kevin D. Murray and Russell Neches and Camille Scott and Ryan Shean and Sascha Steinbiss and Cait Sydney and C. Titus Brown}, title = {khmer release v2.1: software for biological sequence analysis}, journal = {Journal of Open Source Software} }
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bioinformatics sequence analysis Bloom filter Count-Min sketch de Bruijn graph assembly graph traversal streaming quality control

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