tag:joss.theoj.org,2005:/papers/tagged/de%20Bruijn%20graphJournal of Open Source Software2017-07-03T00:00:00ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/2012017-07-03T00:00:00Z2021-02-15T11:34:07Zkhmer release v2.1: software for biological sequence analysisacceptedv2.12017-05-26 00:17:17 UTC152017-07-03 00:00:00 UTC22017272DanielStandageLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis0000-0003-0342-8531AliAliyariIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0003-0925-4886LisaJ.CohenLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Molecular, Cellular, and Integrative Physiology Graduate Group; University of California, Davis0000-0002-3600-7218MichaelR.CrusoeCommon Workflow Language Project0000-0002-2961-9670TimHeadWild Tree Tech0000-0003-0931-3698LuizIrberLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Computer Science Graduate Group; University of California, Davis0000-0003-4371-9659ShannonEkJoslinIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0001-5470-1193N.B.KingsleyIntegrative Genetics and Genomics Graduate Group; University of California, Davis0000-0001-8574-8592KevinD.MurrayARC Centre of Excellence in Plant Energy Biology; Australian National University0000-0002-2466-1917RussellNechesMicrobiology Graduate Group; Univerity of California, Davis0000-0002-2055-8381CamilleScottLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Computer Science Graduate Group; University of California, Davis0000-0001-8822-8779RyanSheanUniversity of WashingtonSaschaSteinbissDebian Project0000-0002-2151-0574CaitSydneyGoogle, Inc.C.TitusBrownLab for Data Intensive Biology; School of Veterinary Medicine; University of California, Davis, Department of Population Health and Reproduction; School of Veterinary Medicine; University of California, Davis0000-0001-6001-267710.21105/joss.00272https://doi.org/10.5281/zenodo.822478Python, C++, Roffhttps://joss.theoj.org/papers/10.21105/joss.00272.pdfbioinformatics, sequence analysis, Bloom filter, Count-Min sketch, de Bruijn graph, assembly, graph traversal, streaming, quality control