tag:joss.theoj.org,2005:/papers/in/C++Journal of Open Source Software2024-03-13T22:02:50ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/43602024-03-13T22:02:50Z2024-03-14T00:01:10ZGPCERF - An R package for implementing Gaussian processes for estimating causal exposure response curvesacceptedv0.2.12023-03-23 15:46:21 UTC952024-03-13 22:02:50 UTC920245465NaeemKhoshnevisUniversity Research Computing and Data Services, Harvard University, Cambridge, Massachusetts, United States of America0000-0003-4315-1426BoyuRenMcLean Hospital, Belmont, Massachusetts, United States of America0000-0002-5300-1184DanielleBraunDepartment of Biostatistics, Harvard School of Public Health, Cambridge, Massachusetts, United States of America0000-0002-5177-859810.21105/joss.05465https://doi.org/10.5281/zenodo.10757333R, C++https://joss.theoj.org/papers/10.21105/joss.05465.pdfcausal inference, Gaussian Processes, causal exposure response functiontag:joss.theoj.org,2005:Paper/48582024-03-06T17:32:25Z2024-03-07T00:00:24Zcalorine: A Python package for constructing and sampling neuroevolution potential modelsacceptedv2.02023-10-21 15:02:27 UTC952024-03-06 17:32:25 UTC920246264EricLindgrenDepartment of Physics, Chalmers University of Technology, Gothenburg 412 96, Sweden0000-0002-8549-6839MagnusRahmDepartment of Physics, Chalmers University of Technology, Gothenburg 412 96, Sweden0000-0002-6777-0371ErikFranssonDepartment of Physics, Chalmers University of Technology, Gothenburg 412 96, Sweden0000-0001-5262-3339FredrikErikssonDepartment of Physics, Chalmers University of Technology, Gothenburg 412 96, Sweden0000-0002-7945-5483NicklasÖsterbackaDepartment of Physics, Chalmers University of Technology, Gothenburg 412 96, Sweden0000-0002-6043-4607ZheyongFanCollege of Physical Science and Technology, Bohai University, Jinzhou 121013, P. R. China0000-0002-2253-8210PaulErhartDepartment of Physics, Chalmers University of Technology, Gothenburg 412 96, Sweden0000-0002-2516-606110.21105/joss.06264https://doi.org/10.5281/zenodo.10723374Python, C++, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.06264.pdfcondensed matter, machine learning, interatomic potentials, force fields, molecular dynamics, neuroevolution, neural networktag:joss.theoj.org,2005:Paper/46922024-03-01T08:15:12Z2024-03-05T12:14:06ZΦ-ML: Intuitive Scientific Computing with Dimension Types for Jax, PyTorch, TensorFlow & NumPyacceptedv1.0.02023-08-11 11:05:07 UTC952024-03-01 08:15:12 UTC920246171PhilippHollSchool of Computation, Information and Technology, Technical University of Munich, Germany0000-0001-9246-5195NilsThuereySchool of Computation, Information and Technology, Technical University of Munich, Germany0000-0001-6647-891010.21105/joss.06171https://doi.org/10.6084/m9.figshare.25282300Python, C++https://joss.theoj.org/papers/10.21105/joss.06171.pdfMachine Learning, Jax, TensorFlow, PyTorch, NumPy, Differentiable simulations, Sparse linear systems, Preconditionerstag:joss.theoj.org,2005:Paper/30012024-02-29T18:30:52Z2024-03-01T00:00:33ZcppTPSA/pyTPSA: a C++/Python package for truncated power series algebraacceptedv1.0.02021-08-27 20:06:27 UTC942024-02-29 18:30:52 UTC920244818HeZhangThomas Jefferson National Accelerator Facility, Newport News, VA 23606, USA0000-0001-7701-411810.21105/joss.04818https://doi.org/10.5281/zenodo.10728770C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04818.pdfdifferential algebra, truncated power series algebra, accelerator physics, astronomy, beam dynamicstag:joss.theoj.org,2005:Paper/42702024-02-22T16:46:16Z2024-02-23T00:01:10ZAkantu: an HPC finite-element library for contact and dynamic fracture simulationsacceptedv4.0.12023-02-28 19:10:56 UTC942024-02-22 16:46:16 UTC920245253NicolasRichartCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1463-4405GuillaumeAnciauxCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-9624-5621EmilGallyamovCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-2970-0890LucasFrérotCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Department of Microsystems Engineering, University of Freiburg, Germany, Institut Jean le Rond d'Alembert, CNRS UMR 7190, Sorbonne Université, France0000-0002-4138-1052DavidKammerCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Institute for Building Materials, ETH Zurich, Switzerland0000-0003-3782-9368MohitPundirCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Institute for Building Materials, ETH Zurich, Switzerland0000-0001-7244-7416MarcoVocialtaCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, SwitzerlandAureliaCubaRamosCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, SwitzerlandMauroCorradoCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, Department of Structural, Geotechnical and Building Engineering, Politecnico di Torino, ItalyPhilipMüllerInstitute for Building Materials, ETH Zurich, SwitzerlandFabianBarrasCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, The Njord Centre Department of Physics, Department of Geosciences, University of Oslo, Norway0000-0003-1109-0200ShenghanZhangCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland, The Hong Kong University of Science and Technology, Department of Civil and Environmental Engineering0000-0002-4327-9115RoxaneFerryCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0003-1881-6596ShadDurusselCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0009-0001-6036-168XJean-FrançoisMolinariCivil Engineering Institute, École Polytechnique Fédérale de Lausanne, Switzerland0000-0002-1728-184410.21105/joss.05253https://doi.org/10.5281/zenodo.10668768C, C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.05253.pdfcohesive element, contact, fracture, pythontag:joss.theoj.org,2005:Paper/50422024-02-09T13:51:24Z2024-02-10T00:01:17Zelsa: an elegant framework for tomographic reconstructionaccepted0.8.02023-12-20 14:16:50 UTC942024-02-09 13:51:24 UTC920246174DavidFrankDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0009-0006-4989-2144JonasJeltenDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0002-5167-2419TobiasLasserDepartment of Computer Science, TUM School of Computation, Information and Technology, Technical University of Munich, Munich, Germany, Munich Institute of Biomedical Engineering, Technical University of Munich, Munich, Germany0000-0001-5669-920X10.21105/joss.06174https://doi.org/10.5281/zenodo.10609174Python, C++, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.06174.pdfComputed Tomography, X-ray Computed Tomography, Tomography, Tomographic Reconstruction, Inverse Problems, Software Frameworktag:joss.theoj.org,2005:Paper/47172024-02-07T21:21:42Z2024-02-14T14:53:20ZCLEAVING: a LAMMPS package to compute surface free energiesacceptedv1.0.02023-08-24 09:40:12 UTC942024-02-07 21:21:42 UTC920245886NicodemoDi PasqualeDepartment of Chemical Engineering, Brunel University London, United Kingdom, (Current affiliation) Department of Industrial Chemistry, University of Bologna, Italy0000-0001-5676-8527RuslanDavidchackDepartment of Mathematics, University of Leicester, United Kingdom0000-0001-9418-5322LorenzoRovigattiDepartment of Physics, Sapienza University of Rome, Italy, CNR-ISC UoS Sapienza, Rome, Italy0000-0001-5017-282910.21105/joss.05886https://doi.org/10.5281/zenodo.10567702C++, Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.05886.pdfLAMMPS, Molecular simulations, Phase Transitionstag:joss.theoj.org,2005:Paper/48992024-02-01T01:26:49Z2024-02-02T00:00:54ZTDEP: Temperature Dependent Effective Potentialsacceptedv1.02023-10-25 16:51:46 UTC942024-02-01 01:26:49 UTC920246150FlorianKnoopTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden0000-0002-7132-039XNinaShulumbaTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden0000-0002-2374-7487AloïsCastellanoNanomat group, QMAT center, CESAM research unit and European Theoretical Spectroscopy Facility, Université de Liège, allée du 6 août, 19, B-4000 Liège, Belgium0000-0002-8783-490XJ.P. AlvarinhasBatistaNanomat group, QMAT center, CESAM research unit and European Theoretical Spectroscopy Facility, Université de Liège, allée du 6 août, 19, B-4000 Liège, Belgium0000-0002-3314-249XRobertaFarrisCatalan Institute of Nanoscience and Nanotechnology - ICN2 (BIST and CSIC), Campus UAB, 08193 Bellaterra (Barcelona), Spain0000-0001-6710-0100MatthieuJ.VerstraeteNanomat group, QMAT center, CESAM research unit and European Theoretical Spectroscopy Facility, Université de Liège, allée du 6 août, 19, B-4000 Liège, Belgium, ITP, Physics Department, University of Utrecht, 3584 CC Utrecht, the Netherlands0000-0001-6921-5163MatthewHeineDepartment of Physics, Boston College, Chestnut Hill, MA 02467, USA0000-0002-4882-6712DavidBroidoDepartment of Physics, Boston College, Chestnut Hill, MA 02467, USA0000-0003-0182-4450DennisS.KimCollege of Letters and Science, Department of Chemistry and Biochemistry, University of California, Los Angeles (UCLA), California 90025, USA0000-0002-5707-2609JohanKlarbringTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden, Department of Materials, Imperial College London, South Kensington Campus, London SW7 2AZ, UK0000-0002-6223-5812IgorA.AbrikosovTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden0000-0001-7551-4717SergeiI.SimakTheoretical Physics Division, Department of Physics, Chemistry and Biology (IFM), Linköping University, SE-581 83 Linköping, Sweden, Department of Physics and Astronomy, Uppsala University, SE-75120 Uppsala, Sweden0000-0002-1320-389XOlleHellmanWeizmann Institute of Science, Rehovot, Israel0000-0002-3453-297510.21105/joss.06150https://doi.org/10.5281/zenodo.10589895Fortran, C++https://joss.theoj.org/papers/10.21105/joss.06150.pdfPhysics, Phonons, Temperature, Anharmonicity, Thermal transport, Neutron spectroscopy, Raman spectroscopytag:joss.theoj.org,2005:Paper/45912024-01-28T18:34:03Z2024-01-29T08:05:01Zmatscipy: materials science at the atomic scale with Pythonaccepted0.8.02023-07-10 11:58:56 UTC932024-01-28 18:34:03 UTC920245668PetrGrigorevAix-Marseille Université, CNRS, CINaM UMR 7325, Campus de Luminy, 13288 Marseille, France0000-0002-6409-9092LucasFrérotDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0002-4138-1052FraserBirksWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0009-0008-9117-0393AdrienGolaDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Institute for Applied Materials, Karlsruhe Institute of Technology, Engelbert-Arnold-Straße 4, 76131 Karlsruhe, Germany0000-0002-5102-1931JacekGolebiowskiDepartment of Materials, Imperial College London, London SW7 2AZ, United Kingdom0000-0001-8053-8318JanGrießerDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0003-2149-6730JohannesL.HörmannDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Cluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-5867-695XAndreasKlemenzFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0001-5677-5639GianpietroMorasFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0002-4623-2881WolframG.NöhringDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0003-4203-755XJonasA.OldenstaedtDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany0000-0002-7475-3019PunitPatelWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United KingdomThomasReichenbachFraunhofer IWM, MikroTribologie Centrum µTC, Wöhlerstraße 11, 79108 Freiburg, Germany0000-0001-7477-6248ThomasRockeWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0002-4612-9112LakshmiShenoyWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0001-5760-3345MichaelWalterCluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-6679-2491SimonWengertFritz Haber Institute of the Max Planck Society, Faradayweg 4-6, 14195 Berlin, Germany0000-0002-8008-1482LeiZhangEngineering and Technology Institute Groningen, Faculty of Science and Engineering, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands0000-0003-4414-7111JamesR.KermodeWarwick Centre for Predictive Modelling, School of Engineering, University of Warwick, Coventry CV4 7AL, United Kingdom0000-0001-6755-6271LarsPastewkaDepartment of Microsystems Engineering, University of Freiburg, 79110 Freiburg, Germany, Cluster of Excellence livMatS, Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, 79110 Freiburg, Germany0000-0001-8351-733610.21105/joss.05668https://doi.org/10.5281/zenodo.10564956C++, C, Meson, Python, Rubyhttps://joss.theoj.org/papers/10.21105/joss.05668.pdfMaterial Science, Atomistic simulationstag:joss.theoj.org,2005:Paper/40952024-01-23T15:58:31Z2024-01-24T00:01:23ZA C++ Implementation of a Cartesian Impedance Controller for Robotic Manipulatorsaccepted1.0.02022-12-20 10:19:22 UTC932024-01-23 15:58:31 UTC920245194MatthiasMayrDepartment of Computer Science, Faculty of Engineering (LTH), Lund University, Sweden, Wallenberg AI, Autonomous Systems and Software Program (WASP), Sweden0000-0002-8198-3154JulianM.Salt-DucajuWallenberg AI, Autonomous Systems and Software Program (WASP), Sweden, Department of Automatic Control, Faculty of Engineering (LTH), Lund University, Sweden0000-0001-5256-824510.21105/joss.05194https://doi.org/10.5281/zenodo.10513691C++, Chttps://joss.theoj.org/papers/10.21105/joss.05194.pdfROS, Compliant Control, Cartesian Impedance Controller