Table of Contents October 2020 Volume 5

Issue 54

maxsmooth: Derivative Constrained Function Fitting
Published 01-10-2020
10.21105/joss.02596
cerebra: A tool for fast and accurate summarizing of variant calling format (VCF) files
Published 01-10-2020
10.21105/joss.02432
SysIdentPy: A Python package for System Identification using NARMAX models
Published 02-10-2020
10.21105/joss.02384
multivar_horner: A Python package for computing Horner factorisations of multivariate polynomials
Published 02-10-2020
10.21105/joss.02392
The Dusty Evolved Star Kit (DESK): A Python package for fitting the Spectral Energy Distribution of Evolved Stars
Published 03-10-2020
10.21105/joss.02554
BrainGlobe Atlas API: a common interface for neuroanatomical atlases
Published 05-10-2020
10.21105/joss.02668
OMG: A Scalable and Flexible Simulation and Testing Environment Toolbox for Intelligent Microgrid Control
Published 05-10-2020
10.21105/joss.02435
txshift: Efficient estimation of the causal effects of stochastic interventions in R
Published 07-10-2020
10.21105/joss.02447
medrxivr: Accessing and searching medRxiv and bioRxiv preprint data in R
Published 09-10-2020
10.21105/joss.02651
A Short Introduction to PF: A C++ Library for Particle Filtering
Published 09-10-2020
10.21105/joss.02599
pirecorder: Controlled and automated image and video recording with the raspberry pi
Published 09-10-2020
10.21105/joss.02584
Bioassays: a new package in R for analyzing cellular assays
Published 10-10-2020
10.21105/joss.02402
GENRE (GPU Elastic-Net REgression): A CUDA-Accelerated Package for Massively Parallel Linear Regression with Elastic-Net Regularization
Published 10-10-2020
10.21105/joss.02644
Exploring meaningful visual effects and quantities of interest from dynamic models through dynamac
Published 10-10-2020
10.21105/joss.02528
cfdm: A Python reference implementation of the CF data model
Published 12-10-2020
10.21105/joss.02717
papaya2: 2D Irreducible Minkowski Tensor computation
Published 12-10-2020
10.21105/joss.02538
CPgeneProfiler: A lightweight R package to profile the Carbapenamase genes from genome assemblies
Published 12-10-2020
10.21105/joss.02473
PyMatting: A Python Library for Alpha Matting
Published 13-10-2020
10.21105/joss.02481
Psifr: Analysis and visualization of free recall data
Published 15-10-2020
10.21105/joss.02669
Minerva: a light-weight, narrative image browser for multiplexed tissue images
Published 15-10-2020
10.21105/joss.02579
textnets: A Python package for text analysis with networks
Published 15-10-2020
10.21105/joss.02594
DARE Platform: a Developer-Friendly and Self-Optimising Workflows-as-a-Service Framework for e-Science on the Cloud
Published 17-10-2020
10.21105/joss.02664
Viime: Visualization and Integration of Metabolomics Experiments
Published 18-10-2020
10.21105/joss.02410
DiffCapAnalyzer: A Python Package for Quantitative Analysis of Total Differential Capacity Data
Published 18-10-2020
10.21105/joss.02624
Ripserer.jl: flexible and efficient persistent homology computation in Julia
Published 19-10-2020
10.21105/joss.02614
pystiche: A Framework for Neural Style Transfer
Published 19-10-2020
10.21105/joss.02761
rFBP: Replicated Focusing Belief Propagation algorithm
Published 20-10-2020
10.21105/joss.02663
21cmFAST v3: A Python-integrated C code for generating 3D realizations of the cosmic 21cm signal.
Published 22-10-2020
10.21105/joss.02582
pfsspy: A Python package for potential field source surface modelling
Published 23-10-2020
10.21105/joss.02732
CASTRO: A Massively Parallel Compressible Astrophysics Simulation Code
Published 23-10-2020
10.21105/joss.02513
pyOptSparse: A Python framework for large-scale constrained nonlinear optimization of sparse systems
Published 24-10-2020
10.21105/joss.02564
dorado: A Python package for simulating passive particle transport in shallow-water flows
Published 25-10-2020
10.21105/joss.02585
pd-parser: A tool for Matching Photodiode Deflection Events to Time-Stamped Events
Published 25-10-2020
10.21105/joss.02674
COINSTAC: Collaborative Informatics and Neuroimaging Suite Toolkit for Anonymous Computation
Published 25-10-2020
10.21105/joss.02166
Moran Pycess: a Python package to simulate Moran processes driven by game theory
Published 26-10-2020
10.21105/joss.02643
SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue
Published 26-10-2020
10.21105/joss.02675
mcbette: model comparison using babette
Published 26-10-2020
10.21105/joss.02762
Peacock.jl: Photonic crystals in Julia
Published 26-10-2020
10.21105/joss.02678
TTLocVis: A Twitter Topic Location Visualization Package
Published 26-10-2020
10.21105/joss.02507
matador: a Python library for analysing, curating and performing high-throughput density-functional theory calculations
Published 27-10-2020
10.21105/joss.02563
ELECTRIC: Electric fields Leveraged from multipole Expansion Calculations in Tinker Rapid Interface Code
Published 27-10-2020
10.21105/joss.02576
biopeaks: a graphical user interface for feature extraction from heart- and breathing biosignals
Published 27-10-2020
10.21105/joss.02621
pvpumpingsystem: A Python package for modeling and sizing photovoltaic water pumping systems
Published 27-10-2020
10.21105/joss.02637
simstudy: Illuminating research methods through data generation
Published 27-10-2020
10.21105/joss.02763
Open Source Optical Coherence Tomography Software
Published 29-10-2020
10.21105/joss.02580
DrWatson: the perfect sidekick for your scientific inquiries
Published 29-10-2020
10.21105/joss.02673
StatAid: An R package with a graphical user interface for data analysis
Published 29-10-2020
10.21105/joss.02630
RK-Opt: A package for the design of numerical ODE solvers
Published 30-10-2020
10.21105/joss.02514
ocean_data_tools: A MATLAB toolbox for interacting with bulk freely-available oceanographic data
Published 30-10-2020
10.21105/joss.02497
Displaying 49 papers

Table of Contents
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ISSN 2475-9066