sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python Submitted 21 April 2022Published 01 June 2022
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Authors

Maxime Borry (0000-0001-9140-7559), Alexander Hübner (0000-0003-3572-9996), Christina Warinner (0000-0002-4528-5877)

Citation

Borry et al., (2022). sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files. Journal of Open Source Software, 7(74), 4360, https://doi.org/10.21105/joss.04360

@article{Borry2022, doi = {10.21105/joss.04360}, url = {https://doi.org/10.21105/joss.04360}, year = {2022}, publisher = {The Open Journal}, volume = {7}, number = {74}, pages = {4360}, author = {Maxime Borry and Alexander Hübner and Christina Warinner}, title = {sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files}, journal = {Journal of Open Source Software} }
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metagenomics microbiome alignment sam bam cram htslib taxonomy LCA ancestor

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