tag:joss.theoj.org,2005:/papers/tagged/cramJournal of Open Source Software2023-11-10T17:15:55ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/46112023-11-10T17:15:55Z2023-11-11T00:00:48ZUsing the tidyverse with terra objects: the tidyterra packageacceptedv0.4.02023-07-19 14:29:47 UTC912023-11-10 17:15:55 UTC820235751DiegoHernangómezIndependent Researcher0000-0001-8457-465810.21105/joss.05751https://doi.org/10.5281/zenodo.10078157https://joss.theoj.org/papers/10.21105/joss.05751.pdfR, CRAN, spatial, vector, raster, tidyverse, terra, ggplot2tag:joss.theoj.org,2005:Paper/35112022-06-01T20:05:57Z2022-06-02T00:01:04Zsam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment filesacceptedv1.0.0b2022-04-21 15:14:38 UTC742022-06-01 20:05:57 UTC720224360MaximeBorryMicrobiome Sciences Group, Max Planck Institute for Evolutionary Anthropology, Department of Archaeogenetics, Leipzig, Germany0000-0001-9140-7559AlexanderHübnerMicrobiome Sciences Group, Max Planck Institute for Evolutionary Anthropology, Department of Archaeogenetics, Leipzig, Germany, Faculty of Biological Sciences, Friedrich-Schiller Universität Jena, Jena, Germany0000-0003-3572-9996ChristinaWarinnerMicrobiome Sciences Group, Max Planck Institute for Evolutionary Anthropology, Department of Archaeogenetics, Leipzig, Germany, Faculty of Biological Sciences, Friedrich-Schiller Universität Jena, Jena, Germany, Department of Anthropology, Harvard University, Cambridge, MA, United States of America0000-0002-4528-587710.21105/joss.04360https://doi.org/10.5281/zenodo.6585307Pythonhttps://joss.theoj.org/papers/10.21105/joss.04360.pdfmetagenomics, microbiome, alignment, sam, bam, cram, htslib, taxonomy, LCA, ancestortag:joss.theoj.org,2005:Paper/20472021-05-13T13:24:09Z2021-05-20T20:10:30ZParaMonte: A high-performance serial/parallel Monte Carlo simulation library for C, C++, Fortranacceptedv1.2.02020-09-29 21:20:03 UTC612021-05-13 13:24:09 UTC620212741AmirShahmoradiDepartment of Physics, The University of Texas, Arlington, TX, Data Science Program, The University of Texas, Arlington, TX0000-0002-9720-8937FatemehBagheriDepartment of Physics, The University of Texas, Arlington, TX10.21105/joss.02741https://doi.org/10.5281/zenodo.4749957Python, Fortranhttps://joss.theoj.org/papers/10.21105/joss.02741.pdfC, C++, Monte Carlo, Markov Chain Monte Carlo, Uncertainty Quantification, Metropolis-Hastings, adaptive sampling, MCMC, DRAMtag:joss.theoj.org,2005:Paper/23552021-04-05T00:59:06Z2021-04-06T00:01:45Zcovid19.analytics: An R Package to Obtain, Analyze and Visualize Data from the 2019 Coronavirus Disease Pandemicacceptedv2.02021-01-25 19:36:00 UTC602021-04-05 00:59:06 UTC620212995MarceloPonceSciNet HPC Consortium, University of Toronto, Canada0000-0001-5850-7240AmitSandhelIndependent Researcher10.21105/joss.02995https://doi.org/10.5281/zenodo.4640307https://joss.theoj.org/papers/10.21105/joss.02995.pdfR, CRAN, coronavirus, data accesstag:joss.theoj.org,2005:Paper/9712019-06-06T19:27:16Z2021-02-15T11:32:16Zpymcmcstat: A Python Package for Bayesian Inference Using Delayed Rejection Adaptive Metropolisacceptedv1.7.02019-04-22 19:29:58 UTC382019-06-06 19:27:16 UTC420191417PaulR.MilesDepartment of Mathematics, North Carolina State University0000-0002-7501-511410.21105/joss.01417https://doi.org/10.5281/zenodo.2660145Python, Jupyter Notebook, C++https://joss.theoj.org/papers/10.21105/joss.01417.pdfMCMC, DRAM, Bayesian Inferencetag:joss.theoj.org,2005:Paper/5582018-08-09T16:37:07Z2021-02-15T11:33:12Zcountrycode: An R package to convert country names and country codesaccepted1.00.02018-07-20 11:59:18 UTC282018-08-09 16:37:07 UTC32018848VincentArel-BundockUniversité de Montréal0000-0003-2042-7063NilsEnevoldsenMassachussetts Institute of Technology0000-0001-7195-4117CjYetmanHertie School of Governance0000-0001-5099-950010.21105/joss.00848https://doi.org/10.5281/zenodo.1341914Rhttps://joss.theoj.org/papers/10.21105/joss.00848.pdfCRAN, social science, country names, country codes, geography