JOSS Papers: taxonomy

All Papers
2262
 Published Papers
2038
 Active Papers
224
published Published 4 months ago

MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis

wdl Jupyter Notebook Python
@ParkvilleData
10.21105/joss.04851
published Published 7 months ago

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy

Dockerfile Python
@ggonnella
10.21105/joss.04755
published Published about 1 year ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python
@maxibor
10.21105/joss.04360
published Published over 1 year ago

Sepia, a taxonomy oriented read classifier in Rust

Python Rust
@hcdenbakker
10.21105/joss.03839
published Published over 2 years ago

EUKulele: Taxonomic annotation of the unsung eukaryotic microbes

Python Batchfile
@akrinos
10.21105/joss.02817
published Published about 4 years ago

MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows

R
@grabear
10.21105/joss.01299
published Published over 4 years ago

rcites: An R package to access the CITES Speciesplus database

R
@JonasGeschke
10.21105/joss.01091
published Published over 4 years ago

hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers

R
@daijiang
10.21105/joss.01041
published Published almost 6 years ago

'Sequana': a Set of Snakemake NGS pipelines

Jupyter Notebook Python
@cokelaer
10.21105/joss.00352
Displaying 9 papers

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ISSN 2475-9066