JOSS Papers: taxonomy

All Papers
2527
 Published Papers
2249
 Active Papers
278
published Published 5 months ago

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation

@Midnighter
10.21105/joss.05627
published Published 10 months ago

MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis

wdl Jupyter Notebook Python
@ParkvilleData
10.21105/joss.04851
published Published about 1 year ago

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy

Python
@ggonnella
10.21105/joss.04755
published Published over 1 year ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python
@maxibor
10.21105/joss.04360
published Published almost 2 years ago

Sepia, a taxonomy oriented read classifier in Rust

Python Rust
@hcdenbakker
10.21105/joss.03839
published Published almost 3 years ago

EUKulele: Taxonomic annotation of the unsung eukaryotic microbes

Python
@akrinos
10.21105/joss.02817
published Published over 4 years ago

MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows

R
@grabear
10.21105/joss.01299
published Published about 5 years ago

rcites: An R package to access the CITES Speciesplus database

R
@JonasGeschke
10.21105/joss.01091
published Published about 5 years ago

hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers

R
@daijiang
10.21105/joss.01041
published Published over 6 years ago

'Sequana': a Set of Snakemake NGS pipelines

Jupyter Notebook Python
@cokelaer
10.21105/joss.00352
Displaying 10 papers

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ISSN 2475-9066