published Published 10 months ago
MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis
wdl Jupyter Notebook Python
published Published about 1 year ago
Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy
Python
published Published over 1 year ago
sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files
Python
published Published almost 2 years ago
Sepia, a taxonomy oriented read classifier in Rust
Python Rust
published Published almost 3 years ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
Python
published Published over 4 years ago
MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows
R
published Published about 5 years ago
rcites: An R package to access the CITES Speciesplus database
R
published Published about 5 years ago
hillR: taxonomic, functional, and phylogenetic diversity and similarity through Hill Numbers
R
published Published over 6 years ago