JOSS Papers: microbiome

All Papers
3128
 Published Papers
2799
 Active Papers
329
published Published 27 days ago

Easy16S: a user-friendly Shiny web-service for exploration and visualization of microbiome data.

R
@CedricMidoux
10.21105/joss.06704
published Published 8 months ago

MiNAA: Microbiome Network Alignment Algorithm

C++
@crsl4
10.21105/joss.05448
published Published over 1 year ago

pymgpipe: microbiome metabolic modeling in Python

Jupyter Notebook Python JetBrains MPS
@ym2877
10.21105/joss.05545
published Published over 2 years ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python
@maxibor
10.21105/joss.04360
published Published about 3 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data

Julia
@kescobo
10.21105/joss.03876
published Published over 3 years ago

microViz: an R package for microbiome data visualization and statistics

R
@david-barnett
10.21105/joss.03201
published Published over 5 years ago

Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification

Python
@maxibor
10.21105/joss.01540
published Published over 5 years ago

phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects

R M4 C++
@schuyler-smith
10.21105/joss.01442
published Published over 5 years ago

MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows

R
@grabear
10.21105/joss.01299
published Published about 6 years ago

q2-sample-classifier: machine-learning tools for microbiome classification and regression

Python
@nbokulich
10.21105/joss.00934
Displaying papers 1 - 10 of 11 in total

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ISSN 2475-9066