JOSS Papers: microbiome

All Papers
2518
 Published Papers
2244
 Active Papers
274
published Published 4 months ago

pymgpipe: microbiome metabolic modeling in Python

Jupyter Notebook Python JetBrains MPS
@ym2877
10.21105/joss.05545
published Published over 1 year ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python
@maxibor
10.21105/joss.04360
published Published about 2 years ago

Microbiome.jl and BiobakeryUtils.jl - Julia packages for working with microbial community data

Julia
@kescobo
10.21105/joss.03876
published Published over 2 years ago

microViz: an R package for microbiome data visualization and statistics

R
@david-barnett
10.21105/joss.03201
published Published about 4 years ago

Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification

Python
@maxibor
10.21105/joss.01540
published Published over 4 years ago

phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects

R M4 C++
@schuyler-smith
10.21105/joss.01442
published Published over 4 years ago

MicrobiomeR: An R Package for Simplified and Standardized Microbiome Analysis Workflows

R
@grabear
10.21105/joss.01299
published Published about 5 years ago

q2-sample-classifier: machine-learning tools for microbiome classification and regression

Python
@nbokulich
10.21105/joss.00934
published Published over 5 years ago

SuchTree: Fast, thread-safe computations with phylogenetic trees

Python Jupyter Notebook
@ryneches
10.21105/joss.00678
Displaying 9 papers

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ISSN 2475-9066