published Published about 1 month ago
Metagenomic classification with KrakenUniq on low-memory computers
Dockerfile Perl
@salzberg
published Published 8 months ago
sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files
Python
@maxibor
published Published over 1 year ago
Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets
Python Jupyter Notebook
@alexismhill3
published Published almost 2 years ago
SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data
Perl Python Prolog
@lskatz
published Published about 2 years ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
Python Batchfile
@akrinos
published Published over 2 years ago
LTRpred: de novo annotation of intact retrotransposons
R UnrealScript
@HajkD
published Published over 3 years ago
Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification
Python
published Published over 3 years ago
phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects
R M4 C++
@schuyler-smith
published Published over 4 years ago
@nbokulich
