JOSS Papers: metagenomics

All Papers
1974
 Published Papers
1762
 Active Papers
212
published Published 4 months ago

sam2lca: Lowest Common Ancestor for SAM/BAM/CRAM alignment files

Python
@maxibor
10.21105/joss.04360
published Published 11 months ago

Opfi: A Python package for identifying gene clusters in large genomics and metagenomics data sets

Python Jupyter Notebook
@alexismhill3
10.21105/joss.03678
published Published over 1 year ago

SneakerNet: A modular quality assurance and quality check workflow for primary genomic and metagenomic read data

Perl Python Prolog
@lskatz
10.21105/joss.02334
published Published over 1 year ago

EUKulele: Taxonomic annotation of the unsung eukaryotic microbes

Python Batchfile
@akrinos
10.21105/joss.02817
published Published over 2 years ago

LTRpred: de novo annotation of intact retrotransposons

R UnrealScript
@HajkD
10.21105/joss.02170
published Published about 3 years ago

Sourcepredict: Prediction of metagenomic sample sources using dimension reduction followed by machine learning classification

Python
@maxibor
10.21105/joss.01540
published Published over 3 years ago

phylosmith: an R-package for reproducible and efficient microbiome analysis with phyloseq-objects

R M4 C++
@schuyler-smith
10.21105/joss.01442
published Published almost 4 years ago

q2-sample-classifier: machine-learning tools for microbiome classification and regression

Python
@nbokulich
10.21105/joss.00934
Displaying all 8 papers

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ISSN 2475-9066