target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files.

Python Nextflow Groovy Submitted 13 September 2024 • Published 23 May 2025
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Editor: @csoneson (all papers)
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Authors

Abhinav Sharma (0000-0002-6402-6993), Talya Conradie (0009-0007-6380-5737), David Martino (0000-0001-6823-4696), Stephen Stick (0000-0002-5386-8482), Patricia Agudelo-Romero (0000-0002-3703-4111)

Citation

Sharma et al., (2025). target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files.. Journal of Open Source Software, 10(109), 7608, https://doi.org/10.21105/joss.07608

@article{Sharma2025, doi = {10.21105/joss.07608}, url = {https://doi.org/10.21105/joss.07608}, year = {2025}, publisher = {The Open Journal}, volume = {10}, number = {109}, pages = {7608}, author = {Abhinav Sharma and Talya Conradie and David Martino and Stephen Stick and Patricia Agudelo-Romero}, title = {target-methylseq-qc: a lightweight pipeline for collecting metrics from targeted sequence mapping files.}, journal = {Journal of Open Source Software} }
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nextflow pipeline bioinformatics picard bedtools metrics reference-fasta target-methylseq methylation-panel quality-control

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Journal of Open Source Software is an affiliate of the Open Source Initiative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

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ISSN 2475-9066