JOSS Papers: pipeline

Published Papers

published Published 3 days ago

stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow

10.21105/joss.09695

published Published 5 days ago

sEEG-Suite: An Interactive Pipeline for Semi-Automated Contact Localization and Anatomical Labeling with Brainstorm

MATLAB Python

@chinmaychinara91

10.21105/joss.10490

published Published 7 days ago

Fetpype: An Open-Source Pipeline for Reproducible Fetal Brain MRI Analysis

Python

10.21105/joss.10278

published Published about 2 months ago

EchoFlow: End-to-end self-supervised sonar-image pipeline

Python

10.21105/joss.09240

published Published 3 months ago

TarGene: A Nextflow pipeline for the estimation of genetic effects on human traits via semi-parametric methods.

Nextflow Julia

@olivierlabayle

10.21105/joss.09603

published Published 3 months ago

nf-core/cutandrun: A Nextflow pipeline for the analysis of CUT&RUN, CUT&Tag and TIP-seq datasets

Awk Python Perl Nextflow

@tamara-hodgetts

10.21105/joss.09672

published Published 3 months ago

nf-core/coproID v2.0: An improved pipeline for the identification of (palaeo)faecal depositors

SCSS Python Nextflow

10.21105/joss.09324

published Published 5 months ago

PyIRD: A Python-Based Data Reduction Pipeline for Subaru/IRD and REACH

Python Jupyter Notebook

10.21105/joss.09126

published Published 5 months ago

DART: A GUI Pipeline for Aligning Histological Brain Sections to 3D Atlases and Automating Laser Microdissection

Jupyter Notebook C C++ Python

10.21105/joss.09109

published Published 5 months ago

ReciPies: A Lightweight Data Transformation Pipeline for Reproducible ML

Jupyter Notebook Python

10.21105/joss.09261

Displaying papers 1 - 10 of 69 in total

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