JOSS Papers: pipeline

All Papers
1038
 Published Papers
909
 Active Papers
129
published Published 2 months ago

Pippin: A pipeline for supernova cosmology

Python
@samreay
10.21105/joss.02122
published Published 12 months ago

A reproducible Snakemake pipeline to analyse Illumina paired-end data from ChiP-Seq experiments

Python
@mgalland
10.21105/joss.01465
published Published over 1 year ago

SeqTools: A python package for easy transformation, combination and evaluation of large datasets.

Python
@nlgranger
10.21105/joss.01006
published Published over 1 year ago

RNAsik: A Pipeline for complete and reproducible RNA-seq analysis that runs anywhere with speed and ease

C Python
@serine
10.21105/joss.00583
published Published almost 2 years ago

aesop: ARC Echelle Spectroscopic Observation Pipeline

Python Common Lisp eC Jupyter Notebook
@bmorris3
10.21105/joss.00854
published Published almost 2 years ago

TDAstats: R pipeline for computing persistent homology in topological data analysis

R C++
@rrrlw
10.21105/joss.00860
published Published about 2 years ago

microPIECE - microRNA pipeline enhanced by CLIP experiments

Perl
@greatfireball
10.21105/joss.00616
published Published over 2 years ago

reper: Genome-wide identification, classification and quantification of repetitive elements without an assembled genome

Perl R
@nterhoeven
10.21105/joss.00527
published Published over 2 years ago

The drake R package: a pipeline toolkit for reproducibility and high-performance computing

R
@wlandau
10.21105/joss.00550
published Published over 2 years ago

Critical care data processing tools

R C++
@sinanshi
10.21105/joss.00513
Displaying papers 1 - 10 of 14 in total

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