DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology

C++ GLSL Submitted 25 April 2024 • Published 13 December 2024
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Authors

Santiago Ospina De Los Ríos (0000-0003-0814-9670), Peter Bastian, Liam Keegan (0000-0002-0654-4979), Sven Sahle (0000-0002-5458-7404), Dylan Vermoortele (0000-0001-8769-783X), Lilija Wehling (0000-0002-8697-5348)

Citation

Ospina De Los Ríos et al., (2024). DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology. Journal of Open Source Software, 9(104), 6836, https://doi.org/10.21105/joss.06836

@article{Ospina De Los Ríos2024, doi = {10.21105/joss.06836}, url = {https://doi.org/10.21105/joss.06836}, year = {2024}, publisher = {The Open Journal}, volume = {9}, number = {104}, pages = {6836}, author = {Santiago Ospina De Los Ríos and Peter Bastian and Liam Keegan and Sven Sahle and Dylan Vermoortele and Lilija Wehling}, title = {DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology}, journal = {Journal of Open Source Software} }
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Diffusion Reaction Networks Multiple Compartments Continuous Galerkin Method Partial Differential Equations Finite Element Method Systems Biology WebAssembly Docker DUNE

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ISSN 2475-9066