JOSS Papers: Systems Biology

All Papers
4008
 Published Papers
3557
 Active Papers
450
published Published 4 months ago

LikelihoodProfiler.jl: Unified profile-likelihood workflows for identifiability and confidence intervals

Julia Jupyter Notebook
@ivborissov
10.21105/joss.09501
published Published 7 months ago

ratesb_python: A Python Package for Analyzing Rate Laws in Biological Models

Python
@longxf21
10.21105/joss.07618
published Published 8 months ago

Improving reproducibility of cheminformatics workflows with chembl-downloader

Jupyter Notebook Python
@cthoyt
10.21105/joss.08844
published Published over 1 year ago

jax-smfsb: A Python library for stochastic systems biology modelling and inference

Python
@darrenjw
10.21105/joss.07491
published Published over 1 year ago

DuneCopasi: A multi-compartment reaction-diffusion simulator for systems biology

C++ GLSL
@SoilRos
10.21105/joss.06836
published Published almost 2 years ago

scribl: A system for the semantic capture of relationships in biological literature

Python
@alexlancaster
10.21105/joss.06645
published Published over 2 years ago

BASICO: A simplified Python interface to COPASI

Python
@fbergmann
10.21105/joss.05553
published Published about 3 years ago

Fast and flexible simulation and parameter estimation for synthetic biology using bioscrape

Python Cython Jupyter Notebook
@ayush9pandey
10.21105/joss.05057
published Published about 4 years ago

PyBioPAX: biological pathway exchange in Python

Python
@bgyori
10.21105/joss.04136
published Published over 4 years ago

Cacatoo: building, exploring, and sharing spatially structured models of biological systems

JavaScript
@bramvandijk88
10.21105/joss.03948
Displaying papers 1 - 10 of 15 in total

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ISSN 2475-9066