Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases

Python Submitted 20 March 2023Published 22 March 2023
Review

Editor: @Kevin-Mattheus-Moerman (all papers)
Reviewers: @Kevin-Mattheus-Moerman (all reviews)

Authors

Semidán Robaina-Estévez (0000-0003-0781-1677), José M. González (0000-0002-9926-3323)

Citation

Robaina-Estévez et al., (2023). Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases. Journal of Open Source Software, 8(83), 5289, https://doi.org/10.21105/joss.05289

@article{Robaina-Estévez2023, doi = {10.21105/joss.05289}, url = {https://doi.org/10.21105/joss.05289}, year = {2023}, publisher = {The Open Journal}, volume = {8}, number = {83}, pages = {5289}, author = {Semidán Robaina-Estévez and José M. González}, title = {Pynteny: a Python package to perform synteny-aware, profile HMM-based searches in sequence databases}, journal = {Journal of Open Source Software} }
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bioinformatics HMMER synteny HMMs sequencing

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