tag:joss.theoj.org,2005:/papers/edited_by/@Kevin-Mattheus-MoermanJournal of Open Source Software2024-03-16T22:48:59ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/46292024-03-16T22:48:59Z2024-03-17T00:00:58ZFeenoX: a cloud-first finite-element(ish) computational engineering toolacceptedv0.32023-07-27 16:01:35 UTC952024-03-16 22:48:59 UTC920245846JeremyThelerSeamplex, Argentina, Instituto Balseiro, Argentina0000-0002-4142-498010.21105/joss.05846https://doi.org/10.5281/zenodo.10819606M4, C, GLSLhttps://joss.theoj.org/papers/10.21105/joss.05846.pdfengineering, partial differential equations, differential algebraic equationstag:joss.theoj.org,2005:Paper/44492024-03-14T19:57:22Z2024-03-15T00:01:22ZOmniTrax: A deep learning-driven multi-animal tracking and pose-estimation add-on for Blenderacceptedv0.2.22023-04-23 08:59:26 UTC952024-03-14 19:57:22 UTC920245549FabianPlumImperial College London, Department of Bioengineering, United Kingdom0000-0003-1012-664610.21105/joss.05549https://doi.org/10.5281/zenodo.10817891Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05549.pdfBlender, multi-object tracking, pose-estimation, deep learningtag:joss.theoj.org,2005:Paper/45952024-02-13T21:19:32Z2024-02-14T14:58:01ZMicroTracker.jl: A Julia package for microbot researchacceptedv0.2.22023-07-12 15:17:55 UTC942024-02-13 21:19:32 UTC920245804CoyJ.ZimmermannDepartment of Chemical and Biological Engineering, Colorado School of Mines, Golden, CO, United States of AmericaKeithB.NeevesDepartments of Bioengineering and Pediatrics, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, United States of AmericaDavidW.m.MarrDepartment of Chemical and Biological Engineering, Colorado School of Mines, Golden, CO, United States of America10.21105/joss.05804https://doi.org/10.5281/zenodo.10578580Juliahttps://joss.theoj.org/papers/10.21105/joss.05804.pdfmicrobot, tracking, colloids, microrobotics, biomedicaltag:joss.theoj.org,2005:Paper/45862024-01-16T15:49:05Z2024-01-19T17:33:56ZAmbit – A FEniCS-based cardiovascular multi-physics solveraccepteddevelopment2023-07-07 14:32:49 UTC932024-01-16 15:49:05 UTC920245744MarcHirschvogelDepartment of Biomedical Engineering, School of Biomedical Engineering & Imaging Sciences, King's College London, London, United Kingdom, MOX, Dipartimento di Matematica, Politecnico di Milano, Milan, Italy0000-0002-4575-912010.21105/joss.05744https://doi.org/10.5281/zenodo.10501275Python, Gnuplothttps://joss.theoj.org/papers/10.21105/joss.05744.pdfcardiovascular mechanics, finite strain solid mechanics, nonlinear elastodynamics, fluid dynamics, 0D lumped models, fluid-solid interaction, fsi, multi-physics couplingtag:joss.theoj.org,2005:Paper/50002024-01-12T08:36:31Z2024-01-13T00:00:51Zdwctaxon, an R package for editing and validating taxonomic data in Darwin Core formatacceptedv2.0.32023-12-15 08:13:29 UTC932024-01-12 08:36:31 UTC920246215JoelH.NittaGraduate School of Global and Transdisciplinary Studies, Chiba University, Japan0000-0003-4719-7472WataruIwasakiDepartment of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, Chiba, Japan, Department of Biological Sciences, Graduate School of Science, The University of Tokyo, Tokyo, Japan, Atmosphere and Ocean Research Institute, The University of Tokyo, Chiba, Japan0000-0002-9169-924510.21105/joss.06215https://doi.org/10.5281/zenodo.6388271Rhttps://joss.theoj.org/papers/10.21105/joss.06215.pdftaxonomy, biodiversitytag:joss.theoj.org,2005:Paper/45362023-10-19T10:06:55Z2023-10-24T01:50:14ZSMART: Spatial Modeling Algorithms for Reactions and Transportacceptedv2.1.12023-06-09 16:19:04 UTC902023-10-19 10:06:55 UTC820235580JustinG.LaughlinDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA, United States of America0000-0001-8229-9760JørgenS.DokkenDepartment of Numerical Analysis and Scientific Computing, Simula Research Laboratory, Oslo, Norway0000-0001-6489-8858HenrikN.t.FinsbergDepartment of Computational Physiology, Simula Research Laboratory, Oslo, Norway0000-0003-3766-2393EmmetA.FrancisDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA, United States of America0000-0001-6070-805XChristopherT.LeeDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA, United States of America0000-0002-0670-2308MarieE.RognesDepartment of Numerical Analysis and Scientific Computing, Simula Research Laboratory, Oslo, Norway0000-0002-6872-3710PadminiRangamaniDepartment of Mechanical and Aerospace Engineering, University of California San Diego, La Jolla, CA, United States of America0000-0001-5953-434710.21105/joss.05580https://doi.org/10.5281/zenodo.10019519Pythonhttps://joss.theoj.org/papers/10.21105/joss.05580.pdfFEniCS, reactions, transport, biophysics, cellular processestag:joss.theoj.org,2005:Paper/42252023-07-31T22:44:21Z2023-08-01T00:01:14ZViMag: A Visual Vibration Analysis Toolboxacceptedv0.1.62023-02-21 08:49:46 UTC872023-07-31 22:44:21 UTC820235491RicardLado-RoigéIQS School of Engineering, Universitat Ramon Llull, Via Augusta 390, 08017 Barcelona, Spain0000-0002-6421-7351MarcoA.PérezIQS School of Engineering, Universitat Ramon Llull, Via Augusta 390, 08017 Barcelona, Spain0000-0003-4140-182310.21105/joss.05491https://doi.org/10.5281/zenodo.8199675JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05491.pdfdeep-learning, modal analysis, condition monitoring, structural health monitoring, motion magnificationtag:joss.theoj.org,2005:Paper/44952023-07-31T20:59:26Z2023-08-01T08:54:15ZCRATE: A Python package to perform fast material simulationsacceptedv1.0.22023-05-18 21:14:00 UTC872023-07-31 20:59:26 UTC820235594BernardoP.FerreiraSchool of Engineering, Brown University, United States of America, Faculty of Engineering, University of Porto, Portugal0000-0001-5956-3877F.M. AndradePiresFaculty of Engineering, University of Porto, Portugal0000-0002-4802-6360MiguelA.BessaSchool of Engineering, Brown University, United States of America0000-0002-6216-035510.21105/joss.05594https://doi.org/10.5281/zenodo.8199879Pythonhttps://joss.theoj.org/papers/10.21105/joss.05594.pdfcomputational mechanics, material simulation, homogenization, clusteringtag:joss.theoj.org,2005:Paper/45792023-07-11T15:34:01Z2023-07-14T13:35:51ZTAXPASTA: TAXonomic Profile Aggregation and STAndardisationaccepted0.4.02023-07-05 17:39:09 UTC872023-07-11 15:34:01 UTC820235627MoritzE.BeberUnseen Bio ApS, Copenhagen, Denmark0000-0003-2406-1978MaximeBorryMicrobiome Sciences Group, Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany, Associated Research Group of Archaeogenetics, Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute, Jena, Germany0000-0001-9140-7559SofiaStamouliDepartment of Microbiology, Tumor and Cell Biology, Karolinska Institute, Solna, Sweden0009-0006-0893-3771JamesA. FellowsYatesMicrobiome Sciences Group, Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany, Associated Research Group of Archaeogenetics, Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute, Jena, Germany, Department of Paleobiotechnology, Leibniz Institute for Natural Product Research and Infection Biology Hans Knöll Institute, Jena, Germany0000-0001-5585-627710.21105/joss.05627https://doi.org/10.5281/zenodo.8105840https://joss.theoj.org/papers/10.21105/joss.05627.pdfbioinformatics, metagenomics, profiling, classification, standardisation, taxonomy, Pythontag:joss.theoj.org,2005:Paper/42662023-07-11T09:24:59Z2023-08-14T07:02:32ZA Python package for homogenization procedures in fiber reinforced polymersacceptedv1.0.102023-02-27 22:27:44 UTC872023-07-11 09:24:59 UTC820235295NicolasChristKarlsruhe Institute of Technology, Karlsruhe, Germany, Fraunhofer Institute for Mechanics of Materials, Freiburg, Germany0000-0002-4713-8096BenediktM.ScheuringKarlsruhe Institute of Technology, Karlsruhe, Germany0000-0003-2971-1431JohnMontesanoUniversity of Waterloo, Waterloo, ON, Canada0000-0003-2723-052XJörgHoheFraunhofer Institute for Mechanics of Materials, Freiburg, Germany0000-0003-3994-456210.21105/joss.05295https://doi.org/10.5281/zenodo.8124344Pythonhttps://joss.theoj.org/papers/10.21105/joss.05295.pdfMechanics, Homogenization, Fiber Reinforced Polymers, Hybrid materials, Mori-Tanaka, Halpin-Tsai