Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

Python Perl Submitted 09 December 2020 • Published 07 January 2021
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Reviewers: @dcnickle (all reviews), @Maghnuso (all reviews)

Authors

John Huddleston (0000-0002-4250-2063), James Hadfield (0000-0002-4118-6468), Thomas R. Sibley (0000-0001-5269-2297), Jover Lee (0000-0002-2391-0512), Kairsten Fay (0000-0002-6529-9205), Misja Ilcisin (0000-0002-1468-7697), Elias Harkins (0000-0001-6525-9134), Trevor Bedford (0000-0002-4039-5794), Richard A. Neher (0000-0003-2525-1407), Emma B. Hodcroft (0000-0002-0078-2212)

Citation

Huddleston et al., (2021). Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. Journal of Open Source Software, 6(57), 2906, https://doi.org/10.21105/joss.02906

@article{Huddleston2021, doi = {10.21105/joss.02906}, url = {https://doi.org/10.21105/joss.02906}, year = {2021}, publisher = {The Open Journal}, volume = {6}, number = {57}, pages = {2906}, author = {John Huddleston and James Hadfield and Thomas R. Sibley and Jover Lee and Kairsten Fay and Misja Ilcisin and Elias Harkins and Trevor Bedford and Richard A. Neher and Emma B. Hodcroft}, title = {Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens}, journal = {Journal of Open Source Software} }
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bioinformatics molecular biology human pathogens evolutionary biology

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Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

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