Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens

Python Perl Submitted 09 December 2020 • Published 07 January 2021
Software repository Paper review Download paper Software archive
Review

Editor: @majensen (all papers)
Reviewers: @dcnickle (all reviews), @Maghnuso (all reviews)

Authors

John Huddleston (0000-0002-4250-2063), James Hadfield (0000-0002-4118-6468), Thomas R. Sibley (0000-0001-5269-2297), Jover Lee (0000-0002-2391-0512), Kairsten Fay (0000-0002-6529-9205), Misja Ilcisin (0000-0002-1468-7697), Elias Harkins (0000-0001-6525-9134), Trevor Bedford (0000-0002-4039-5794), Richard A. Neher (0000-0003-2525-1407), Emma B. Hodcroft (0000-0002-0078-2212)

Citation

Huddleston et al., (2021). Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens. Journal of Open Source Software, 6(57), 2906, https://doi.org/10.21105/joss.02906

@article{Huddleston2021, doi = {10.21105/joss.02906}, url = {https://doi.org/10.21105/joss.02906}, year = {2021}, publisher = {The Open Journal}, volume = {6}, number = {57}, pages = {2906}, author = {John Huddleston and James Hadfield and Thomas R. Sibley and Jover Lee and Kairsten Fay and Misja Ilcisin and Elias Harkins and Trevor Bedford and Richard A. Neher and Emma B. Hodcroft}, title = {Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens}, journal = {Journal of Open Source Software} }
Copy citation string · Copy BibTeX  
Tags

bioinformatics molecular biology human pathogens evolutionary biology

Altmetrics
Markdown badge

 

License

Authors of JOSS papers retain copyright.

This work is licensed under a Creative Commons Attribution 4.0 International License.

Creative Commons License

Journal of Open Source Software is an affiliate of the Open Source Initiative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Table of Contents
Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066