tag:joss.theoj.org,2005:/papers/tagged/human%20pathogensJournal of Open Source Software2021-01-07T14:27:34ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/22272021-01-07T14:27:34Z2021-02-15T11:29:38ZAugur: a bioinformatics toolkit for phylogenetic analyses of human pathogensacceptedv10.1.12020-12-09 23:55:20 UTC572021-01-07 14:27:34 UTC620212906JohnHuddlestonMolecular and Cellular Biology Program, University of Washington, Seattle, WA, USA, Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0002-4250-2063JamesHadfieldVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0002-4118-6468ThomasR.SibleyVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0001-5269-2297JoverLeeVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0002-2391-0512KairstenFayVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0002-6529-9205MisjaIlcisinVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0002-1468-7697EliasHarkinsVaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0001-6525-9134TrevorBedfordMolecular and Cellular Biology Program, University of Washington, Seattle, WA, USA, Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA0000-0002-4039-5794RichardA.NeherBiozentrum, University of Basel, Basel, Switzerland, Swiss Institute of Bioinformatics, Basel, Switzerland0000-0003-2525-1407EmmaB.HodcroftBiozentrum, University of Basel, Basel, Switzerland, Swiss Institute of Bioinformatics, Basel, Switzerland, Institute of Social and Preventive Medicine, University of Bern, Bern, Switzerland0000-0002-0078-221210.21105/joss.02906https://doi.org/10.5281/zenodo.4421955Python, Perlhttps://joss.theoj.org/papers/10.21105/joss.02906.pdfbioinformatics, molecular biology, human pathogens, evolutionary biology