sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets

Luiz Irber; N. Tessa Pierce-Ward; Mohamed Abuelanin; Harriet Alexander; Abhishek Anant; Keya Barve; Colton Baumler; Olga Botvinnik; Phillip Brooks; Daniel Dsouza; Laurent Gautier; Mahmudur Rahman Hera; Hannah Eve Houts; Lisa K. Johnson; Fabian Klötzl; David Koslicki; Marisa Lim; Ricky Lim; Bradley Nelson; Ivan Ogasawara; Taylor Reiter; Camille Scott; Andreas Sjödin; Daniel Standage; S. Joshua Swamidass; Connor Tiffany; Pranathi Vemuri; Erik Young; C. Titus Brown

doi:10.21105/joss.06830

Review

Editor: @Kevin-Mattheus-Moerman (all papers)
Reviewers: @Kevin-Mattheus-Moerman (all reviews)

Authors

Luiz Irber (0000-0003-4371-9659), N. Tessa Pierce-Ward (0000-0002-2942-5331), Mohamed Abuelanin (0000-0002-3419-4785), Harriet Alexander (0000-0003-1308-8008), Abhishek Anant (0000-0002-5751-2010), Keya Barve (0000-0003-3241-2117), Colton Baumler (0000-0002-5926-7792), Olga Botvinnik (0000-0003-4412-7970), Phillip Brooks (0000-0003-3987-244X), Daniel Dsouza (0000-0001-7843-8596), Laurent Gautier (0000-0003-0638-3391), Mahmudur Rahman Hera (0000-0002-5992-9012), Hannah Eve Houts (0000-0002-7954-4793), Lisa K. Johnson (0000-0002-3600-7218), Fabian Klötzl (0000-0002-6930-0592), David Koslicki (0000-0002-0640-954X), Marisa Lim (0000-0003-2097-8818), Ricky Lim (0000-0003-1313-7076), Bradley Nelson (0009-0001-1553-932X), Ivan Ogasawara (0000-0001-5049-4289), Taylor Reiter (0000-0002-7388-421X), Camille Scott (0000-0001-8822-8779), Andreas Sjödin (0000-0001-5350-4219), Daniel Standage (0000-0003-0342-8531), S. Joshua Swamidass (0000-0003-2191-0778), Connor Tiffany (0000-0001-8188-7720), Pranathi Vemuri (0000-0002-5748-9594), Erik Young (0000-0002-9195-9801), C. Titus Brown (0000-0001-6001-2677)

Citation

Irber et al., (2024). sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. Journal of Open Source Software, 9(98), 6830, https://doi.org/10.21105/joss.06830

@article{Irber2024, doi = {10.21105/joss.06830}, url = {https://doi.org/10.21105/joss.06830}, year = {2024}, publisher = {The Open Journal}, volume = {9}, number = {98}, pages = {6830}, author = {Irber, Luiz and Pierce-Ward, N. Tessa and Abuelanin, Mohamed and Alexander, Harriet and Anant, Abhishek and Barve, Keya and Baumler, Colton and Botvinnik, Olga and Brooks, Phillip and Dsouza, Daniel and Gautier, Laurent and Hera, Mahmudur Rahman and Houts, Hannah Eve and Johnson, Lisa K. and Klötzl, Fabian and Koslicki, David and Lim, Marisa and Lim, Ricky and Nelson, Bradley and Ogasawara, Ivan and Reiter, Taylor and Scott, Camille and Sjödin, Andreas and Standage, Daniel and Swamidass, S. Joshua and Tiffany, Connor and Vemuri, Pranathi and Young, Erik and Brown, C. Titus}, title = {sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets}, journal = {Journal of Open Source Software} }

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