PPanGGOLiN V2: technical enhancement and extended functionalities for prokaryotic pangenome analysis

Python C Cython Submitted 24 June 2026 • Published 14 November 2026
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Authors

Jérôme Arnoux (0000-0003-2769-3006), Jean Mainguy (0009-0006-9160-9744), Adelme Bazin (0000-0002-5656-4708), Guillaume Gautreau (0000-0002-0970-9361), Téo Lemane (0000-0002-7210-3178), David Vallenet (0000-0001-6648-0332), Alexandra Calteau (0000-0002-5871-9347)

Citation

Arnoux et al., (2026). PPanGGOLiN V2: technical enhancement and extended functionalities for prokaryotic pangenome analysis. Journal of Open Source Software, 11(127), 11101, https://doi.org/10.21105/joss.11101

@article{Arnoux2026, doi = {10.21105/joss.11101}, url = {https://doi.org/10.21105/joss.11101}, year = {2026}, publisher = {The Open Journal}, volume = {11}, number = {127}, pages = {11101}, author = {Arnoux, Jérôme and Mainguy, Jean and Bazin, Adelme and Gautreau, Guillaume and Lemane, Téo and Vallenet, David and Calteau, Alexandra}, title = {PPanGGOLiN V2: technical enhancement and extended functionalities for prokaryotic pangenome analysis}, journal = {Journal of Open Source Software} }
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Bioinformatics Pangenomics Microbial genomics Mobile genetic elements Comparative genomics Pangenome graph

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