DART: A GUI Pipeline for Aligning Histological Brain Sections to 3D Atlases and Automating Laser Microdissection

Jupyter Notebook C C++ Python Submitted 03 September 2025Published 14 January 2026
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Editor: @adamltyson (all papers)
Reviewers: @Yannan-Chen (all reviews), @NicoKiaru (all reviews), @Julie-Fabre (all reviews)

Authors

Rishi Koneru (0009-0002-3714-0122), Manjari Anant (0000-0002-6600-3410), Hyopil Kim (0000-0001-9159-8682), Julian Cheron (0000-0001-6369-0019), Justus M. Kebschull (0000-0002-4851-0267)

Citation

Koneru et al., (2026). DART: A GUI Pipeline for Aligning Histological Brain Sections to 3D Atlases and Automating Laser Microdissection. Journal of Open Source Software, 11(117), 9109, https://doi.org/10.21105/joss.09109

@article{Koneru2026, doi = {10.21105/joss.09109}, url = {https://doi.org/10.21105/joss.09109}, year = {2026}, publisher = {The Open Journal}, volume = {11}, number = {117}, pages = {9109}, author = {Koneru, Rishi and Anant, Manjari and Kim, Hyopil and Cheron, Julian and Kebschull, Justus M.}, title = {DART: A GUI Pipeline for Aligning Histological Brain Sections to 3D Atlases and Automating Laser Microdissection}, journal = {Journal of Open Source Software} }
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neuroscience laser dissection atlas GUI

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