sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets

Luiz Irber; N. Tessa Pierce-Ward; Mohamed Abuelanin; Harriet Alexander; Abhishek Anant; Keya Barve; Colton Baumler; Olga Botvinnik; Phillip Brooks; Daniel Dsouza; Laurent Gautier; Mahmudur Rahman Hera; Hannah Eve Houts; Lisa K. Johnson; Fabian Klötzl; David Koslicki; Marisa Lim; Ricky Lim; Bradley Nelson; Ivan Ogasawara; Taylor Reiter; Camille Scott; Andreas Sjödin; Daniel Standage; S. Joshua Swamidass; Connor Tiffany; Pranathi Vemuri; Erik Young; C. Titus Brown

doi:10.21105/joss.06830

Review

Editor: @Kevin-Mattheus-Moerman (all papers)
Reviewers: @Kevin-Mattheus-Moerman (all reviews)

Authors

Luiz Irber (0000-0003-4371-9659), N. Tessa Pierce-Ward (0000-0002-2942-5331), Mohamed Abuelanin (0000-0002-3419-4785), Harriet Alexander (0000-0003-1308-8008), Abhishek Anant (0000-0002-5751-2010), Keya Barve (0000-0003-3241-2117), Colton Baumler (0000-0002-5926-7792), Olga Botvinnik (0000-0003-4412-7970), Phillip Brooks (0000-0003-3987-244X), Daniel Dsouza (0000-0001-7843-8596), Laurent Gautier (0000-0003-0638-3391), Mahmudur Rahman Hera (0000-0002-5992-9012), Hannah Eve Houts (0000-0002-7954-4793), Lisa K. Johnson (0000-0002-3600-7218), Fabian Klötzl (0000-0002-6930-0592), David Koslicki (0000-0002-0640-954X), Marisa Lim (0000-0003-2097-8818), Ricky Lim (0000-0003-1313-7076), Bradley Nelson (0009-0001-1553-932X), Ivan Ogasawara (0000-0001-5049-4289), Taylor Reiter (0000-0002-7388-421X), Camille Scott (0000-0001-8822-8779), Andreas Sjödin (0000-0001-5350-4219), Daniel Standage (0000-0003-0342-8531), S. Joshua Swamidass (0000-0003-2191-0778), Connor Tiffany (0000-0001-8188-7720), Pranathi Vemuri (0000-0002-5748-9594), Erik Young (0000-0002-9195-9801), C. Titus Brown (0000-0001-6001-2677)

Citation

Irber et al., (2024). sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets. Journal of Open Source Software, 9(98), 6830, https://doi.org/10.21105/joss.06830

@article{Irber2024, doi = {10.21105/joss.06830}, url = {https://doi.org/10.21105/joss.06830}, year = {2024}, publisher = {The Open Journal}, volume = {9}, number = {98}, pages = {6830}, author = {Luiz Irber and N. Tessa Pierce-Ward and Mohamed Abuelanin and Harriet Alexander and Abhishek Anant and Keya Barve and Colton Baumler and Olga Botvinnik and Phillip Brooks and Daniel Dsouza and Laurent Gautier and Mahmudur Rahman Hera and Hannah Eve Houts and Lisa K. Johnson and Fabian Klötzl and David Koslicki and Marisa Lim and Ricky Lim and Bradley Nelson and Ivan Ogasawara and Taylor Reiter and Camille Scott and Andreas Sjödin and Daniel Standage and S. Joshua Swamidass and Connor Tiffany and Pranathi Vemuri and Erik Young and C. Titus Brown}, title = {sourmash v4: A multitool to quickly search, compare, and analyze genomic and metagenomic data sets}, journal = {Journal of Open Source Software} }

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