starfish: scalable pipelines for image-based transcriptomics

Jupyter Notebook Python wdl Submitted 29 June 2020Published 04 May 2021
Review

Editor: @csoneson (all papers)
Reviewers: @giovp (all reviews), @shazanfar (all reviews), @vals (all reviews)

Authors

Shannon Axelrod, Matthew Cai (0000-0003-4998-6328), Ambrose J. Carr (0000-0002-8457-2836), Jeremy Freeman (0000-0001-7077-7972), Deep Ganguli, Justin T. Kiggins (0000-0002-4638-7015), Brian Long (0000-0002-7793-5969), Tony Tung, Kevin A. Yamauchi (0000-0002-7818-1388)

Citation

Axelrod et al., (2021). starfish: scalable pipelines for image-based transcriptomics. Journal of Open Source Software, 6(61), 2440, https://doi.org/10.21105/joss.02440

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Tags

xarray skimage microscopy imaging biology single cell biology spatial transcriptomics MERFISH In Situ Sequencing osmFISH smFISH BaristaSeq dartfish starmap seqFISH

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ISSN 2475-9066