JOSS Papers: biology

Published Papers

published Published 15 days ago

scphylo-tools: A Python toolkit for single-cell tumor phylogenetic analysis

Python R

10.21105/joss.10589

published Published 3 months ago

The Pulmonary Agent-based Infection simulator (PAI): A Multi-Scale Agent-Based Model of Pulmonary Host-Pathogen Interactions

C++ Python

10.21105/joss.10245

published Published 3 months ago

pangeo-fish: A Python package for studying fish movement using biologging and earth science data

Jupyter Notebook Python

10.21105/joss.08332

published Published 6 months ago

Tissue Data Explorer: a website template for presenting tissue sample research findings

Python JavaScript

10.21105/joss.09218

published Published 8 months ago

LikelihoodProfiler.jl: Unified profile-likelihood workflows for identifiability and confidence intervals

Julia Jupyter Notebook

10.21105/joss.09501

published Published 11 months ago

ratesb_python: A Python Package for Analyzing Rate Laws in Biological Models

Python

10.21105/joss.07618

published Published about 1 year ago

Improving reproducibility of cheminformatics workflows with chembl-downloader

Jupyter Notebook Python

10.21105/joss.08844

published Published about 1 year ago

scmorph: a Python package for analysing single-cell morphological profiles

Python R

10.21105/joss.08324

published Published over 1 year ago

cellular_raza: Cellular Agent-based Modeling from a Clean Slate

Rust Python Cuda C

10.21105/joss.07723

published Published over 1 year ago

<code>diverse-seq</code>: an application for alignment-free selecting and clustering biological sequences

Python Jupyter Notebook

10.21105/joss.07765

Displaying papers 1 - 10 of 78 in total

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