JOSS Papers: microscopy

All Papers
1446
 Published Papers
1256
 Active Papers
190
published Published 11 days ago

starfish: scalable pipelines for image-based transcriptomics

Jupyter Notebook Python wdl
@neuromusic
10.21105/joss.02440
published Published 13 days ago

fastPLI: A Fiber Architecture Simulation Toolbox for 3D-PLI

Python C++
@fmatuschke
10.21105/joss.03042
published Published 4 months ago

Cellocity: A Python package for analysis of confluent cell layer dynamics

Python
@oftatkofta
10.21105/joss.02818
published Published 7 months ago

SLIX: A Python package for fully automated evaluation of Scattered Light Imaging measurements on brain tissue

Python
@Thyre
10.21105/joss.02675
published Published 7 months ago

BrainGlobe Atlas API: a common interface for neuroanatomical atlases

Python Jupyter Notebook
@adamltyson
10.21105/joss.02668
published Published 11 months ago

LiberTEM: Software platform for scalable multidimensional data processing in transmission electron microscopy

C Python Scala
@uellue
10.21105/joss.02006
published Published over 1 year ago

ExTemp: A computational and image-processing suite for extracting temporal barcodes

Matlab
@shalinshah1993
10.21105/joss.02026
Displaying all 7 papers

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ISSN 2475-9066