The Journal of Open Source Software

A developer friendly journal for research software packages.

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scikit-learn-contrib / hdbscan

HDBSCAN* - Hierarchical Density-Based Spatial Clustering of Applications with Noise. Performs DBSCAN over varying epsilon values and integrates the result to find a clustering that gives the best...

DOI pending

sgrieve / spatial_efd

A pure python implementation of the elliptical Fourier analysis method described by `Kuhl and Giardina (1982) ( This...

DOI pending

msmexplorer / msmexplorer

MSMExplorer is a Python visualization library for statistical models of biomolecular dynamics. It provides a high-level interface for drawing attractive statistical graphics with MSMBuilder.

DOI pending

luk87 / YoungTab

YoungTab is a mathematical tool to compute the dimension of irreducible representations of the classical Lie algebras A, B, C, D, described by Young tableaux. In particular for any Young tableau...

DOI pending

cdcrabtree / plotrr

plotrr provides several functions for making visual exploratory data analysis with nested data easier.

DOI pending

roguephysicist / SHGYield

SHGYield is a python program for calculating the second-harmonic generation (SHG) yield for semiconductor surfaces, and can be used for conducting theoretical second-harmonic spectroscopy of any...

DOI pending

migueldvb / cine

CINE is a Python package for calculating effective pumping rates for the
excitation of vibrational bands by solar radiation and the ensuing fluorescence
to the ground vibrational state. These...

DOI pending

NickC1 / skedm

This python package implements nonlinear time series analysis techniques, also referred to as empirical dynamic modeling. skedm provides various methods for analyzing the evolution of nearby...

DOI pending

lebebr01 / highlightHTML

This software aims to facilitate and extend basic formatting of reproducible R markdown documents for text and tables compared to functionality supported by markdown. This package uses CSS and HTML...

DOI pending

CC-HIC / cleanEHR

Essential tools and utility functions to facilitate the data processing pipeline, data cleaning and data analysing of clinical data from Critical Care Health Informatics Collaborative's dataset.

DOI pending

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