The Journal of Open Source Software

A developer friendly, open access journal for research software packages.

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CFSAN-Biostatistics / vcftoolz

Bioinformatics software to compare and view VCF files. This software is being used by FDA and other US government agencies as part of research efforts involving food-borne bacterial pathogens..
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stablemarkets / ChiRP

ChiRP is an R-based implementation of a flexible class of Bayesian nonparametric regression/clustering methods.

DistrictDataLabs / yellowbrick

Yellowbrick is an open source, pure Python project that extends the scikit-learn API with visual analysis and diagnostic tools to facilitate machine learning model selection. Yellowbrick helps...

Hoosier-Clusters / clusim

Here we introduce CluSim, a comprehensive Python package for the comparison of partitions, overlapping clusterings, and hierarchical clusterings (dendrograms) with more than 20 similarity...

3dct / open_iA

A tool for the visual analysis and processing of volumetric datasets, with a focus on industrial computed tomography.

garrettj403 / QMix

QMix calculates the quantum tunneling currents in superconductor/insulator/superconductor (SIS) junctions. These junctions are used in astronomy to create extremely sensitive heterodyne receivers.

KVSlab / morphMan

morphMan is a tool for automated and objective manipulation of tubular geometries, here exemplified by vascular geometries. The tool will allow researchers to investigate how the morphology of the...

bjmorgan / pyscses

pyscses is an open source python package for modelling ionic space charge regions in crystalline solids. Taking input of atomically resolved positions and defect segregation energies it solves a 1D...

mrecos / klrfome

KLRfome is a package for predicting a geographic area's realtive sensitivity for the presence of archaeological sites. This is achieved by fitting, predicting, and visualizing a Kernel Logistic...

ucgmsim / GMSimViz

GMSimViz creates an animation of ground motion simulation data. It makes a perspective map animation of the fault slip distribution and the ground motion with respect to time. It can also display...

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