The Journal of Open Source Software

A developer friendly journal for research software packages.

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scikit-learn-contrib / forest-confidence-interval

Forest-Confidence-Interval is a Python module for calculating variance and adding confidence intervals to scikit-learn random forest regression or classification objects.

DOI pending

kdesimone / popeye

Popeye is a Python library for designing, estimating, and validating population receptive field (pRF) models. The pRF model is a quantitative model of the cumulative response of the population of...

DOI pending

SALib / SALib

SALib contains Python implementations of commonly used global sensitivity analysis methods, which are useful in simulation, optimisation, and systems modelling to calculate the influence of model...

DOI pending

zmjones / edarf

Functions useful for exploratory data analysis using random forests which can be used to compute multivariate partial dependence, observation, class, and variable-wise marginal and joint...

DOI pending

Pyessence is a Python code designed to allow the testing of linearly perturbed coupled quintessence models with multiple Cold Dark Matter fluid species and multiple Dark Energy scalar fields;...

DOI pending

openeventdata / mordecai

Custom-built full text geoparsing. Extract all the place names from a piece of text, resolve them to the correct place, and return their coordinates and structured geographic information.

DOI pending

eclipse / golo-lang

Golo is a simple dynamically-typed programming language for the Java Virtual Machine (JVM) that has been designed to leverage the capabilities of the Java 7 invokedynamic bytecode instruction and...

DOI pending

bihealth / vcfpy

VCFPy provides a well-documented, easy to use, and pythonic interface to reading and writing VCF files.
It supports VCF v4.3, reading and writing of both plain-text and bgzip-compressed VCF files,...

DOI pending

DannyArends / CTLmapping

CTL mapping is a novel approach to detect genetic regulation of phenotypes in natural and experimental populations. It is a method which complements classical QTL analysis, providing additional...

DOI pending

sanger-pathogens / gff3toembl.git

Converts GFF3 annotated assemblies into a format suitable for submission to EMBL. This is an essential missing step for open, reproducible genomic science and has been used to submit over 30% of...

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