The Journal of Open Source Software

A developer friendly journal for research software packages.

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baccuslab / pyret

The pyret package contains tools for analyzing neural electrophysiology data. It focuses on applications in sensory neuroscience, broadly construed as any experiment in which one would like to...

DOI pending

varocarbas / FlexibleParser

UnitParser is a comprehensive .NET unit parsing library. It can recognise, simplify, classify and convert a wide variety of scenarios involving units of measurement. Additionally, it manages all...

DOI pending

Effective-Quadratures / Effective-Quadratures

Effective-Quadratures (EQ) is a suite of tools for generating polynomials for parametric computational studies. These polynomials may be used to compute approximations to scientific models;...

DOI pending

wilsoncai1992 / data.adapt.multi.test

The data.adapt.multi.test R package is a tool for performing multiple testing on effects sizes under high-dimensional settings, using the approach of data-adaptive statistical target parameters...

DOI pending

camillescott / shmlast

shmlast is a reimplementation of the Conditional Reciprocal Best Hits (https://github.com/cboursnell/crb-blast) algorithm for finding potential orthologs between a transcriptome and a...

DOI pending

jeff-goldsmith / vbvs.concurrent

The software implements statistical methods for fitting the functional linear concurrent model in R. Supporting methods extract coefficients, compute predicted values for new datasets, and...

DOI pending

mllg / batchtools

Tools for R to work with batch systems managed by schedulers like Slurm, Torque or Docker Swarm. Also offers functionality to compute and manage large scale computer experiments.

DOI pending

https://sourceforge.net/p/kactus2/code/HEAD/tree/trunk/

Kactus2 is a graphical EDA tool targeted for packing and assembling building blocks for ASICs and FPGAs, based on the IP-XACT standard. It supports Verilog, VHDL, and other formats.

DOI pending

warrenlr / RAILS

Here, I make available two bioinformatics software tools to exploit this information for automated finishing (software Cobbler) and scaffolding (software RAILS) with long DNA sequences. They can be...

https://bitbucket.org/dghoshal/frieda

FRIEDA stands for Flexible Robust Intelligent Elastic Data Management. Scientific applications are increasingly using cloud resources for their data analysis workflows. FRIEDA is a Flexible Robust...

DOI pending

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