The Journal of Open Source Software

A developer friendly journal for research software packages.

Learn more »

ropensci / phylogram

The phylogram R package is a tool for for developing phylogenetic trees as deeply-nested lists known as "dendrogram" objects. It provides functions for conversion between dendrograms and "phylo"...

christophM / iml

iml is an R package that offers a general toolbox for making machine learning models interpretable.

strengejacke / ggeffects

ggeffects is an R-package that aims at easily calculating marginal effects for a broad range of different regression models. Functions are type-safe and always return a data frame with the same,...

jfjlaros / bin-parser

We present a library that aims to keep the effort of reverse engineering binary file formats to a minimum by providing a framework that enables a programmer to record knowledge about a binary file...

salabim / salabim

Salabim is a Python package for discrete event simulation, using the same methodology as in Simula, Tomas and must. The powerful animation makes it easy to debug en demonstrate models. Queues,...

HajkD / philentropy

An R package that implements a mathematical library of 46 distance and similarity measures for comparing probability density functions.

strengejacke / sjmisc

Collection of miscellaneous utility functions, supporting data transformation tasks like recoding, dichotomizing or grouping variables, setting and replacing missing values. The data transformation...

dgasmith / opt_einsum

opt_einsum is a tensor contraction order optimizer for NumPy with support for additional distributed and GPU compute backends like Dask and Tensorflow. This order optimization can lead to...

jrbourbeau / pyunfold

PyUnfold is an extensible framework for the deconvolution of discrete probability distributions via an iterative unfolding method.

vmtk / vmtk

The Vascular Modeling Toolkit is a collection of libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis for image-based modeling of blood vessels.

View all papers »