pymgpipe: microbiome metabolic modeling in Python

Jupyter Notebook Python JetBrains MPS Submitted 18 May 2023Published 02 August 2023

Editor: @fboehm (all papers)
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Yoli Meydan (0009-0003-4597-3340), Federico Baldini (0000-0001-9079-8869), Tal Korem (0000-0002-0609-0858)


Meydan et al., (2023). pymgpipe: microbiome metabolic modeling in Python. Journal of Open Source Software, 8(88), 5545,

@article{Meydan2023, doi = {10.21105/joss.05545}, url = {}, year = {2023}, publisher = {The Open Journal}, volume = {8}, number = {88}, pages = {5545}, author = {Yoli Meydan and Federico Baldini and Tal Korem}, title = {pymgpipe: microbiome metabolic modeling in Python}, journal = {Journal of Open Source Software} }
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metabolic modeling flux balance analysis microbial communities microbiome

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