MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis

wdl Jupyter Notebook Python Submitted 08 September 2022Published 20 February 2023
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Editor: @jmschrei (all papers)
Reviewers: @Ebedthan (all reviews), @rjorton (all reviews)

Authors

Babak Shaban (0000-0002-7393-810X), Maria del Mar Quiroga (0000-0002-8943-2808), Robert Turnbull (0000-0003-1274-6750), Edoardo Tescari (0000-0003-1157-4897), Kim-Anh Lê Cao (0000-0003-3923-1116), Heroen Verbruggen (0000-0002-6305-4749)

Citation

Shaban et al., (2023). MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis. Journal of Open Source Software, 8(82), 4851, https://doi.org/10.21105/joss.04851

@article{Shaban2023, doi = {10.21105/joss.04851}, url = {https://doi.org/10.21105/joss.04851}, year = {2023}, publisher = {The Open Journal}, volume = {8}, number = {82}, pages = {4851}, author = {Babak Shaban and Maria del Mar Quiroga and Robert Turnbull and Edoardo Tescari and Kim-Anh Lê Cao and Heroen Verbruggen}, title = {MetaGenePipe: An Automated, Portable Pipeline for Contig-based Functional and Taxonomic Analysis}, journal = {Journal of Open Source Software} }
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metagenomics WDL Singularity Containerization

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ISSN 2475-9066