RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes

M4 C Submitted 15 February 2022Published 28 December 2022
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Editor: @lpantano (all papers)
Reviewers: @swatimanekar (all reviews), @samhorsfield96 (all reviews)

Authors

Clément Agret (0000-0002-7404-7253), Annie Chateau (0000-0003-4760-8171), Gaetan Droc (0000-0003-1849-1269), Gautier Sarah (0000-0001-5179-972X), Manuel Ruiz (0000-0001-8153-276X), Alban Mancheron (0000-0001-9249-7592)

Citation

Agret et al., (2022). RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes. Journal of Open Source Software, 7(80), 4363, https://doi.org/10.21105/joss.04363

@article{Agret2022, doi = {10.21105/joss.04363}, url = {https://doi.org/10.21105/joss.04363}, year = {2022}, publisher = {The Open Journal}, volume = {7}, number = {80}, pages = {4363}, author = {Clément Agret and Annie Chateau and Gaetan Droc and Gautier Sarah and Manuel Ruiz and Alban Mancheron}, title = {RedOak: a reference-free and alignment-free structure for indexing a collection of similar genomes}, journal = {Journal of Open Source Software} }
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C/C++ Bioinformatic k-mers Genomes Index

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ISSN 2475-9066