JOSS Papers: Genomes

All Papers
4028
 Published Papers
3594
 Active Papers
433
published Published 5 days ago

stylo: a lightweight nanopore assembly pipeline optimized for enteric bacteria

Nextflow
@mohitmthakur
10.21105/joss.09695
published Published 9 days ago

CGView.js: a JavaScript package for visualizing small genomes

JavaScript Ruby
@sciguy
10.21105/joss.09930
published Published about 1 month ago

PileupCaller: A command-line tool to sample genotypes from low-coverage sequencing data of ancient DNA

Haskell D Python
@stschiff
10.21105/joss.08634
published Published about 1 month ago

Enhancing short-read sequencing simulation: Updates to NEAT

Python
@keshav-gandhi
10.21105/joss.09056
published Published about 1 month ago

NPLinker 2: a modular and customizable framework for paired omics analyses

Python Mustache
@justinjjvanderhooft
10.21105/joss.09528
published Published 3 months ago

perbase: A performant per-base sequencing metrics toolkit with accurate handling of complex alignments

Python Rust
@sstadick
10.21105/joss.09774
published Published 5 months ago

genomesizeR: An R package for genome size prediction

R
@celine-mercier
10.21105/joss.08759
published Published 6 months ago

Ziplign: a simple-to-use interactive tool to compare bacterial genomes

GDScript
@martinghunt
10.21105/joss.09004
published Published 6 months ago

PANKEGG: Integrative Visualisation and Comparison of Metagenome-Assembled Genomes Annotation, Taxonomy, and Quality

Python
@RVanDamme
10.21105/joss.09188
published Published 7 months ago

ggoncoplot: an R package for interactive visualisation of somatic mutation data from cancer patient cohorts

R
@selkamand
10.21105/joss.07390
Displaying papers 1 - 10 of 88 in total

Journal of Open Source Software is an affiliate of the Open Source Initiative.

Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

Table of Contents
Public user content licensed CC BY 4.0 unless otherwise specified.
ISSN 2475-9066