BONSAI: A framework for processing and analysing Electronic Health Records (EHR) data using transformer-based models

Python Submitted 30 June 2025Published 20 October 2025
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Authors

Maria Elkjær Montgomery (0009-0000-3809-0513), Kiril Klein (0000-0001-8779-0209), Mikkel Odgaard (0000-0002-9072-0874), Stephan Sloth Lorenzen (0000-0001-6701-3752), Zahra Sobhaninia

Citation

Montgomery et al., (2025). BONSAI: A framework for processing and analysing Electronic Health Records (EHR) data using transformer-based models. Journal of Open Source Software, 10(114), 8869, https://doi.org/10.21105/joss.08869

@article{Montgomery2025, doi = {10.21105/joss.08869}, url = {https://doi.org/10.21105/joss.08869}, year = {2025}, publisher = {The Open Journal}, volume = {10}, number = {114}, pages = {8869}, author = {Montgomery, Maria Elkjær and Klein, Kiril and Odgaard, Mikkel and Lorenzen, Stephan Sloth and Sobhaninia, Zahra}, title = {BONSAI: A framework for processing and analysing Electronic Health Records (EHR) data using transformer-based models}, journal = {Journal of Open Source Software} }
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EHR BERT healthcare machine learning

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ISSN 2475-9066