Taxonomy Resolver: A Python package for building and filtering taxonomy trees

Python Submitted 15 October 2024 • Published 21 February 2025
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Review

Editor: @csoneson (all papers)
Reviewers: @ryneches (all reviews), @tbrittoborges (all reviews)

Authors

Fábio Madeira (0000-0001-8728-9449), Nandana Madhusoodanan (0000-0001-5004-152X), Joonheung Lee (0000-0002-5760-2761), Alberto Eusebi (0000-0001-5179-7724), Ania Niewielska (0000-0003-0989-3389), Sarah Butcher (0000-0002-4494-5124)

Citation

Madeira et al., (2025). Taxonomy Resolver: A Python package for building and filtering taxonomy trees. Journal of Open Source Software, 10(106), 7604, https://doi.org/10.21105/joss.07604

@article{Madeira2025, doi = {10.21105/joss.07604}, url = {https://doi.org/10.21105/joss.07604}, year = {2025}, publisher = {The Open Journal}, volume = {10}, number = {106}, pages = {7604}, author = {Fábio Madeira and Nandana Madhusoodanan and Joonheung Lee and Alberto Eusebi and Ania Niewielska and Sarah Butcher}, title = {Taxonomy Resolver: A Python package for building and filtering taxonomy trees}, journal = {Journal of Open Source Software} }
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Taxonomy Tree Hierarchy NCBI Taxonomy NCBI BLAST+ Nested Set Model Modified Preorder Tree Traversal

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Journal of Open Source Software is part of Open Journals, which is a NumFOCUS-sponsored project.

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ISSN 2475-9066