pridepy: A Python package to download and search data from PRIDE database

Python Submitted 08 October 2024Published 24 March 2025
Review

Editor: @skanwal (all papers)
Reviewers: @MohmedSoudy (all reviews), @cramacha (all reviews)

Authors

Selvakumar Kamatchinathan (0009-0001-3644-2586), Suresh Hewapathirana (0000-0002-7862-5022), Chakradhar Bandla (0000-0001-6392-3759), Santiago Insua (0000-0002-9247-243X), Juan Antonio Vizcaíno (0000-0002-3905-4335), Yasset Perez-Riverol (0000-0001-6579-6941)

Citation

Kamatchinathan et al., (2025). pridepy: A Python package to download and search data from PRIDE database. Journal of Open Source Software, 10(107), 7563, https://doi.org/10.21105/joss.07563

@article{Kamatchinathan2025, doi = {10.21105/joss.07563}, url = {https://doi.org/10.21105/joss.07563}, year = {2025}, publisher = {The Open Journal}, volume = {10}, number = {107}, pages = {7563}, author = {Selvakumar Kamatchinathan and Suresh Hewapathirana and Chakradhar Bandla and Santiago Insua and Juan Antonio Vizcaíno and Yasset Perez-Riverol}, title = {pridepy: A Python package to download and search data from PRIDE database}, journal = {Journal of Open Source Software} }
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proteomics mass spectrometry pride archive big data

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