khmer release v2.1: software for biological sequence analysis

Python C++ Roff Submitted 26 May 2017Published 03 July 2017
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Authors

Daniel Standage (0000-0003-0342-8531), Ali Aliyari (0000-0003-0925-4886), Lisa J. Cohen (0000-0002-3600-7218), Michael R. Crusoe (0000-0002-2961-9670), Tim Head (0000-0003-0931-3698), Luiz Irber (0000-0003-4371-9659), Shannon Ek Joslin (0000-0001-5470-1193), N. B. Kingsley (0000-0001-8574-8592), Kevin D. Murray (0000-0002-2466-1917), Russell Neches (0000-0002-2055-8381), Camille Scott (0000-0001-8822-8779), Ryan Shean, Sascha Steinbiss (0000-0002-2151-0574), Cait Sydney, C. Titus Brown (0000-0001-6001-2677)

Citation

Standage et al, (2017), khmer release v2.1: software for biological sequence analysis, Journal of Open Source Software, 2(15), 272, doi:10.21105/joss.00272

@article{Standage2017, doi = {10.21105/joss.00272}, url = {https://doi.org/10.21105/joss.00272}, year = {2017}, publisher = {The Open Journal}, volume = {2}, number = {15}, pages = {272}, author = {Standage, Daniel and Aliyari, Ali and Cohen, Lisa J. and Crusoe, Michael R. and Head, Tim and Irber, Luiz and Joslin, Shannon Ek and Kingsley, N. B. and Murray, Kevin D. and Neches, Russell and Scott, Camille and Shean, Ryan and Steinbiss, Sascha and Sydney, Cait and Brown, C. Titus}, title = {khmer release v2.1: software for biological sequence analysis}, journal = {Journal of Open Source Software} }
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bioinformatics sequence analysis Bloom filter Count-Min sketch de Bruijn graph assembly graph traversal streaming quality control

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