tag:joss.theoj.org,2005:/papers/tagged/yamlJournal of Open Source Software2023-05-08T14:22:03ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/42892023-05-08T14:22:03Z2023-05-09T13:03:36Zyam: Yet another monitoring tool using correlations of ambient noiseacceptedv0.7.12023-03-08 13:44:43 UTC852023-05-08 14:22:03 UTC820235267TomEulenfeldInstitute of Geosciences, Friedrich Schiller University Jena, Germany0000-0002-8378-559X10.21105/joss.05267https://doi.org/10.5281/zenodo.7893762Pythonhttps://joss.theoj.org/papers/10.21105/joss.05267.pdfgeophysics, seismology, cross-correlation, ambient noise, monitoring, seismic velocity changestag:joss.theoj.org,2005:Paper/36792023-01-13T19:54:53Z2023-01-14T00:00:57ZRHEA: an open-source Reproducible Hybrid-architecture flow solver Engineered for Academiaacceptedv1.0.02022-06-24 17:38:19 UTC812023-01-13 19:54:53 UTC820234637LluísJofreDepartment of Fluid Mechanics, Universitat Politècnica de Catalunya · BarcelonaTech (UPC), Barcelona 08019, Spain0000-0003-2437-259XAhmedAbdellatifDepartment of Fluid Mechanics, Universitat Politècnica de Catalunya · BarcelonaTech (UPC), Barcelona 08019, Spain0000-0002-8810-7480GuillermoOyarzunDepartment of Computer Applications in Science & Engineering, Barcelona Supercomputing Center, Barcelona 08034, Spain0000-0001-9524-378210.21105/joss.04637https://doi.org/10.5281/zenodo.7525886JavaScripthttps://joss.theoj.org/papers/10.21105/joss.04637.pdfCompressible flow, Fluid mechanics, Ideal- & real-gas thermodynamics, Turbulence, C++, MPI, OpenACC, HDF5, YAMLtag:joss.theoj.org,2005:Paper/25642021-05-27T16:05:54Z2021-05-28T00:01:20Zyaml2sbml: Human-readable and -writable specification of ODE models and their conversion to SBMLacceptedv0.2.22021-04-09 14:32:35 UTC612021-05-27 16:05:54 UTC620213215JakobVanhoeferFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany0000-0002-3451-1701MartaR. a.MatosThe Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, DK-2800 Kgs. Lyngby, Denmark0000-0003-4288-1005DilanPathiranaFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany0000-0001-7000-2659YannikSchälteInstitute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany, Department of Mathematics, Technical University Munich, Garching, Germany0000-0003-1293-820XJanHasenauerFaculty of Mathematics and Natural Sciences, University of Bonn, Bonn, Germany, Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany, Department of Mathematics, Technical University Munich, Garching, Germany0000-0002-4935-331210.21105/joss.03215https://doi.org/10.5281/zenodo.4787416Pythonhttps://joss.theoj.org/papers/10.21105/joss.03215.pdfSBML, Ordinary Differential Equation, YAMLtag:joss.theoj.org,2005:Paper/15772020-09-02T00:00:00Z2022-08-25T16:35:40ZUtopia: A Comprehensive and Collaborative Modeling Framework for Complex and Evolving Systemsacceptedlatest2020-03-07 19:20:06 UTC532020-09-02 00:00:00 UTC520202165LukasRiedelInstitute of Environmental Physics, Heidelberg University, Germany, Interdisciplinary Center for Scientific Computing, Heidelberg University, Germany, Heidelberg Graduate School of Mathematical and Computational Methods for the Sciences, Heidelberg University, Germany0000-0002-4667-3652BenjaminHerdeanuInstitute of Environmental Physics, Heidelberg University, Germany, Heidelberg Graduate School for Physics, Heidelberg University, Germany0000-0001-6343-3004HaraldMackInstitute of Environmental Physics, Heidelberg University, Germany0000-0001-7787-9496YunusSevinchanInstitute of Environmental Physics, Heidelberg University, Germany0000-0003-3858-0904JulianWeningerDepartment of Biochemistry, University of Geneva, Switzerland10.21105/joss.02165https://doi.org/10.5281/zenodo.4011979C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.02165.pdfComplex Systems, Agent-based Models, Modeling Framework, Computational Science, Docker, GitLab, HDF5, YAMLtag:joss.theoj.org,2005:Paper/16072020-08-23T00:00:00Z2022-08-25T16:41:55Zdantro: a Python package for handling, transforming, and visualizing hierarchically structured dataacceptedv0.132020-05-20 14:00:10 UTC522020-08-23 00:00:00 UTC520202316YunusSevinchanInstitute of Environmental Physics, Heidelberg University, Germany0000-0003-3858-0904BenjaminHerdeanuInstitute of Environmental Physics, Heidelberg University, Germany, Heidelberg Graduate School for Physics, Heidelberg University, Germany0000-0001-6343-3004JeremiasTraubInstitute of Environmental Physics, Heidelberg University, Germany0000-0001-8911-636510.21105/joss.02316https://doi.org/10.5281/zenodo.3986628Pythonhttps://joss.theoj.org/papers/10.21105/joss.02316.pdfYAML, computer simulations, research software, data analysis, plotting, data processing pipeline, configuration-based interfaces, hierarchical data structures, HDF5tag:joss.theoj.org,2005:Paper/5122018-06-21T18:18:03Z2021-02-15T11:33:20ZGeneral binary file parser.accepted0.0.202018-06-03 10:30:06 UTC262018-06-21 18:18:03 UTC32018766JeroenF.j.LarosLeiden University Medical Center,10.21105/joss.00766https://doi.org/10.5281/zenodo.1295625Python, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.00766.pdfbinary, parser, yaml, json, read writetag:joss.theoj.org,2005:Paper/2462017-08-30T00:00:00Z2021-02-15T11:33:59ZPipengine: an ultra light YAML-based pipeline execution engineaccepted0.9.32017-07-25 09:57:08 UTC162017-08-30 00:00:00 UTC22017341FrancescoStrozziEnterome Bioscience, Paris - France0000-0002-6845-6982RaoulJean PierreBonnalINGM - Isitituto Nazionale Genetica Molecolare 'Romeo ed Enrica Invernizzi': Milan, Italy0000-0002-2123-653610.21105/joss.00341https://doi.org/10.5281/zenodo.851892Rubyhttps://joss.theoj.org/papers/10.21105/joss.00341.pdfpipeline, workflows, reproducibility