tag:joss.theoj.org,2005:/papers/tagged/utilitiesJournal of Open Source Software2024-02-16T17:47:05ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/48332024-02-16T17:47:05Z2024-02-19T16:37:19Zhplc-py: A Python Utility For Rapid Quantification of Complex Chemical Chromatogramsacceptedv0.2.22023-10-05 04:28:27 UTC942024-02-16 17:47:05 UTC920246270GriffinChureDepartment of Biology, Stanford University, CA, United States of America, For correspondence, contact griffinchure@gmail.com0000-0002-2216-2057JonasCremerDepartment of Biology, Stanford University, CA, United States of America0000-0003-2328-515210.21105/joss.06270https://doi.org/10.5281/zenodo.10642439Pythonhttps://joss.theoj.org/papers/10.21105/joss.06270.pdfAnalytical Chemistry, Quantitative Methods, HPLC, Chromatographytag:joss.theoj.org,2005:Paper/41032023-08-14T18:55:46Z2023-08-23T14:25:01ZSciris: Simplifying scientific software in Pythonaccepted2.1.02022-12-24 17:36:09 UTC882023-08-14 18:55:46 UTC820235076CliffC.KerrInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, School of Physics, University of Sydney, Sydney, Australia0000-0003-2517-2354PaulaSanz-LeonInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA0000-0002-1545-6380RomeshG.AbeysuriyaInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, Burnet Institute, Melbourne, Australia0000-0002-9618-6457GeorgeL.ChadderdonBurnet Institute, Melbourne, Australia, CAE USA, Tampa, USA0000-0002-3034-2330Vlad-ŞtefanHarbuzSaffron Software, Bucharest, RomaniaParhamSaidiSaffron Software, Bucharest, RomaniaMaria del MarQuirogaBurnet Institute, Melbourne, Australia, Melbourne Data Analytics Platform, The University of Melbourne, Melbourne, Australia0000-0002-8943-2808RowanMartin-HughesBurnet Institute, Melbourne, Australia0000-0002-3724-2412SherrieL.KellyBurnet Institute, Melbourne, Australia0000-0002-6232-5586JamieA.CohenInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA0000-0002-8479-1860RobynM.StuartInstitute for Disease Modeling, Global Health Division, Bill \& Melinda Gates Foundation, Seattle, USA, Department of Mathematical Sciences, University of Copenhagen, Copenhagen, Denmark0000-0001-6867-9265AnnaNachesaGoogle, Zürich, Switzerland10.21105/joss.05076https://doi.org/10.5281/zenodo.8245253Pythonhttps://joss.theoj.org/papers/10.21105/joss.05076.pdfpython, scientific software development, computational science, numerical utilities, containers, plottingtag:joss.theoj.org,2005:Paper/41092023-08-10T16:25:33Z2023-08-14T19:35:34ZCeRULEo: Comprehensive utilitiEs for Remaining Useful Life Estimation methOdsacceptedv2.0.32022-12-31 17:37:29 UTC882023-08-10 16:25:33 UTC820235294LucianoLorentiDepartment of Engineering, University of Padova. Italy0000-0002-4041-449XGianAntonioSustoDepartment of Engineering, University of Padova. Italy0000-0001-5739-963910.21105/joss.05294https://doi.org/10.5281/zenodo.8187300Pythonhttps://joss.theoj.org/papers/10.21105/joss.05294.pdfpredictive maintenance, remaining useful lifetag:joss.theoj.org,2005:Paper/34192023-04-11T15:47:05Z2023-06-08T19:07:56ZFlowSieve: A Coarse-Graining Utility for Geophysical Flows on the Sphereacceptedv3.0.02022-03-11 16:47:12 UTC842023-04-11 15:47:05 UTC820234277BenjaminA.StorerDepartment of Mechanical Engingeering, University of Rochester, USA0000-0001-5955-2158HusseinAluieDepartment of Mechanical Engingeering, University of Rochester, USA0000-0003-3516-369710.21105/joss.04277https://doi.org/10.5281/zenodo.7818192C++, C, Pythonhttps://joss.theoj.org/papers/10.21105/joss.04277.pdfcoarse graining, scale decomposition, fluid dynamicstag:joss.theoj.org,2005:Paper/37602022-08-27T06:41:11Z2022-08-28T00:00:51Zρμ: A Java library of randomization enhancements and other math utilitiesacceptedv2.3.22022-08-02 21:16:08 UTC762022-08-27 06:41:11 UTC720224663VincentA.CicirelloComputer Science, School of Business, Stockton University, Galloway, NJ 08205, USA0000-0003-1072-855910.21105/joss.04663https://doi.org/10.5281/zenodo.7026452Javahttps://joss.theoj.org/papers/10.21105/joss.04663.pdfrandomization, pseudorandom numbers, sampling algorithms, math utilities, random number distributions, random streamstag:joss.theoj.org,2005:Paper/28472021-10-08T00:36:30Z2021-10-09T00:01:58ZTidyTensor: Utilities for multidimensional arrays as named hierarchical structuresacceptedv0.9.12021-07-13 23:54:42 UTC662021-10-08 00:36:30 UTC620213543ShawnT.O'NeilCenter for Health Artificial Intelligence, University of Colorado Anschutz Medical Campus0000-0001-6220-708010.21105/joss.03543https://doi.org/10.5281/zenodo.5555276R, JavaScripthttps://joss.theoj.org/papers/10.21105/joss.03543.pdfdeep learning, array, tensor, tidytag:joss.theoj.org,2005:Paper/12122019-10-18T21:17:43Z2021-02-15T11:31:38ZGKNAP: A Java and C++ package for solving the multidimensional knapsack problemacceptedv1.62019-09-12 22:21:52 UTC422019-10-18 21:17:43 UTC420191756ShalinShahJohns Hopkins University0000-0002-3770-139110.21105/joss.01756https://doi.org/10.5281/zenodo.3507931C++, Javahttps://joss.theoj.org/papers/10.21105/joss.01756.pdfknapsack, multidimensional knapsack, solver, lagrangian multipliers, utility ratiotag:joss.theoj.org,2005:Paper/8922019-02-17T02:00:59Z2021-02-15T11:32:31Ztqdm: A Fast, Extensible Progress Meter for Python and CLIretractedv4.31.12019-02-17 02:00:59 UTCtag:joss.theoj.org,2005:Paper/6372019-01-22T19:10:25Z2021-02-15T11:32:57ZGFAKluge: A C++ library and command line utilities for the Graphical Fragment Assembly formatsacceptedv1.0.02018-09-24 10:52:02 UTC332019-01-22 19:10:25 UTC420191083EricT.DawsonDivision of Cancer Epidemiology and Genetics, National Cancer Institute, Rockville, MD, USA, Department of Genetics, University of Cambridge, Cambridge, UK, Wellcome Sanger Institute, Hinxton, UK0000-0001-5448-1653RichardDurbinDepartment of Genetics, University of Cambridge, Cambridge, UK, Wellcome Sanger Institute, Hinxton, UK0000-0002-9130-100610.21105/joss.01083https://doi.org/10.5281/zenodo.2546721Perl, C++, Pythonhttps://joss.theoj.org/papers/10.21105/joss.01083.pdfGFA, genome assembly, bioinformaticstag:joss.theoj.org,2005:Paper/4852018-06-20T11:10:10Z2021-02-15T11:33:24ZHelpMe Command Line Helper Utilityaccepted0.0.22018-04-30 14:58:33 UTC262018-06-20 11:10:10 UTC32018775VanessaSochatStanford University Research Computing0000-0002-4387-381910.21105/joss.00775https://doi.org/10.5281/zenodo.1293062Pythonhttps://joss.theoj.org/papers/10.21105/joss.00775.pdfDocker, github, uservoice, support, hpc, computing