tag:joss.theoj.org,2005:/papers/tagged/trackingJournal of Open Source Software2024-03-14T19:57:22ZJournal of Open Source Softwarehttps://joss.theoj.orgtag:joss.theoj.org,2005:Paper/44492024-03-14T19:57:22Z2024-03-15T00:01:22ZOmniTrax: A deep learning-driven multi-animal tracking and pose-estimation add-on for Blenderacceptedv0.2.22023-04-23 08:59:26 UTC952024-03-14 19:57:22 UTC920245549FabianPlumImperial College London, Department of Bioengineering, United Kingdom0000-0003-1012-664610.21105/joss.05549https://doi.org/10.5281/zenodo.10817891Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.05549.pdfBlender, multi-object tracking, pose-estimation, deep learningtag:joss.theoj.org,2005:Paper/44372024-03-08T22:12:15Z2024-03-10T08:11:09ZEthome: tools for machine learning of animal behavioracceptedv0.6.02023-04-18 06:25:31 UTC952024-03-08 22:12:15 UTC920245623BenjaminLansdellDevelopmental Neurobiology, St Jude Children's Research Hospital, Memphis, Tennessee, United States of America0000-0003-1444-1950AbbasShirinifardDevelopmental Neurobiology, St Jude Children's Research Hospital, Memphis, Tennessee, United States of America10.21105/joss.05623https://doi.org/10.5281/zenodo.10680136Python, Rubyhttps://joss.theoj.org/papers/10.21105/joss.05623.pdfsupervised-learning, deeplabcut, boris, neurodata-without-borders, pose-tracking, ndx-pose, animal-behaviortag:joss.theoj.org,2005:Paper/45952024-02-13T21:19:32Z2024-02-14T14:58:01ZMicroTracker.jl: A Julia package for microbot researchacceptedv0.2.22023-07-12 15:17:55 UTC942024-02-13 21:19:32 UTC920245804CoyJ.ZimmermannDepartment of Chemical and Biological Engineering, Colorado School of Mines, Golden, CO, United States of AmericaKeithB.NeevesDepartments of Bioengineering and Pediatrics, University of Colorado Denver, Anschutz Medical Campus, Aurora, CO, United States of AmericaDavidW.m.MarrDepartment of Chemical and Biological Engineering, Colorado School of Mines, Golden, CO, United States of America10.21105/joss.05804https://doi.org/10.5281/zenodo.10578580Juliahttps://joss.theoj.org/papers/10.21105/joss.05804.pdfmicrobot, tracking, colloids, microrobotics, biomedicaltag:joss.theoj.org,2005:Paper/45522023-10-03T17:53:40Z2023-10-04T00:00:38ZPurpleCaffeine: tracking of quantum programs and experimentsacceptedv0.2.02023-06-19 22:22:46 UTC902023-10-03 17:53:40 UTC820235673IskandarSitdikovIBM Quantum, T.J. Watson Research Center, Yorktown Heights, NY 10598, USA0000-0002-6809-8943MichaëlRollinShape-IT, France0000-0001-8619-8190AnsahMohammadKuriyodathSardar Vallabhbhai National Institute of Technology, Surat, India0009-0005-5517-5363LuisEduardo MartínezHérnandezNetcracker, Mexico0000-0003-0354-509210.21105/joss.05673https://doi.org/10.5281/zenodo.8357519Pythonhttps://joss.theoj.org/papers/10.21105/joss.05673.pdfquantum computing, qiskit, experiment trackingtag:joss.theoj.org,2005:Paper/45232023-10-03T12:45:56Z2023-10-04T00:00:43ZPort: A software tool for digital data donationacceptedv1.0.12023-06-03 10:23:31 UTC902023-10-03 12:45:56 UTC820235596LauraBoeschotenUtrecht University, The Netherlands0000-0002-3536-0474NiekC.de SchipperUniversity of Amsterdam, The Netherlands0000-0002-8462-9791AdriënneM.MendrikEyra Leap B.V., the Netherlands0000-0001-6631-7068Emielvan der VeenEyra Leap B.V., the Netherlands0000-0002-4895-6584BellaStruminskayaUtrecht University, The Netherlands0000-0002-5944-8163HeleenJanssenUniversity of Amsterdam, The Netherlands0000-0002-2785-5741TheoAraujoUniversity of Amsterdam, The Netherlands0000-0002-4633-933910.21105/joss.05596https://doi.org/10.5281/zenodo.8401806JavaScripthttps://joss.theoj.org/papers/10.21105/joss.05596.pdfdata donation, digital trace data, local processing, pyodide, elixirtag:joss.theoj.org,2005:Paper/40302023-10-02T07:49:41Z2023-10-04T15:51:32ZSMITE: Single Molecule Imaging Toolbox Extraordinaire (MATLAB)acceptedv0.2.02022-11-28 23:42:12 UTC902023-10-02 07:49:41 UTC820235563DavidJ.SchodtDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-8986-2736MichaelJ.WesterDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America, Department of Mathematics and Statistics, Albuquerque, University of New Mexico, United States of America0000-0002-3520-7605MohamadrezaFazelDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6215-1336SajjadKhanDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6910-5199HaniehMazloom-FarsibafDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-2571-0418SandeepPallikkuthDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0009-0003-0400-6389MarjoleinB. m.MeddensDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9965-1342FarzinFarzamDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9939-1923EricA.BurnsDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-1625-2400WilliamK.KanagyDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-5756-9965DerekA.RinaldiDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0009-0000-8394-3626EltonJhambaDepartment of Pathology, University of New Mexico Health Sciences Center, Albuquerque, United States of America0000-0002-5272-6466ShengLiuDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0003-1225-0763PeterK.RelichDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-6063-6233MarkJ.OlahDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of AmericaStanlyL.SteinbergDepartment of Mathematics and Statistics, Albuquerque, University of New Mexico, United States of AmericaKeithA.LidkeDepartment of Physics and Astronomy, University of New Mexico, Albuquerque, United States of America0000-0002-9328-431810.21105/joss.05563https://doi.org/10.5281/zenodo.8327409MATLAB, Cuda, C++, Chttps://joss.theoj.org/papers/10.21105/joss.05563.pdfsingle molecule localization microscopy (SMLM), single particle tracking (SPT), super resolutiontag:joss.theoj.org,2005:Paper/43962023-06-12T08:03:36Z2023-06-20T20:35:26ZDeepOF: a Python package for supervised and unsupervised pattern recognition in mice motion tracking dataacceptedv0.22023-04-12 15:39:51 UTC862023-06-12 08:03:36 UTC820235394LucasMirandaResearch Group Statistical Genetics, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-5484-6744JoeriBordesResearch Group Neurobiology of Stress Resilience, Max Planck Institute of Psychiatry, Munich, Germany0000-0003-2909-2976BennoPützResearch Group Statistical Genetics, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-2208-209XMathiasV.SchmidtResearch Group Neurobiology of Stress Resilience, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-3788-2268BertramMüller-MyhsokResearch Group Statistical Genetics, Max Planck Institute of Psychiatry, Munich, Germany0000-0002-0719-101X10.21105/joss.05394https://doi.org/10.5281/zenodo.8013401Pythonhttps://joss.theoj.org/papers/10.21105/joss.05394.pdfbiology, neuroscience, behavioral annotationtag:joss.theoj.org,2005:Paper/40192023-04-20T13:55:20Z2023-04-21T00:03:24ZPyExperimenter: Easily distribute experiments and track resultsaccepted1.1.02022-11-22 12:16:00 UTC842023-04-20 13:55:20 UTC820235149TanjaTornedeDepartment of Computer Science, Paderborn University, Germany0000-0001-9954-462XAlexanderTornedeDepartment of Computer Science, Paderborn University, Germany0000-0002-2415-2186LukasFehringDepartment of Computer Science, Paderborn University, Germany0000-0001-8057-4650LukasGehringDepartment of Computer Science, Paderborn University, GermanyHelenaGrafDepartment of Computer Science, Paderborn University, Germany0000-0001-9447-0609JonasHanselleDepartment of Computer Science, Paderborn University, Germany0000-0002-1231-4985FelixMohrUniversidad de La Sabana, Chia, Cundinamarca, Colombia0000-0002-9293-2424MarcelWeverMCML, Institut for Informatics, LMU Munich, Germany0000-0001-9782-681810.21105/joss.05149https://doi.org/10.5281/zenodo.7838280Pythonhttps://joss.theoj.org/papers/10.21105/joss.05149.pdfExperiments, Executor, Databasetag:joss.theoj.org,2005:Paper/36862022-12-13T22:19:24Z2022-12-16T16:04:22Zdtrackr: An R package for tracking the provenance of dataaccepted0.2.32022-06-28 15:30:26 UTC802022-12-13 22:19:24 UTC720224707RobertChallenEngineering Mathematics, University of Bristol, Bristol, United Kingdom, College of Engineering, Mathematics and Physical Sciences, University of Exeter, Devon, United Kingdom0000-0002-5504-776810.21105/joss.04707https://doi.org/10.5281/zenodo.7433514Rhttps://joss.theoj.org/papers/10.21105/joss.04707.pdfdata pipeline, consort diagram, strobe statement, data quality, reproducible researchtag:joss.theoj.org,2005:Paper/35042022-07-30T17:54:01Z2022-07-31T17:28:51ZMyPTV: A Python Package for 3D Particle Trackingacceptedv0.22022-04-14 12:13:19 UTC752022-07-30 17:54:01 UTC720224398RonShnappSwiss Federal Institute for Forest, Snow and Landscape Research WSL, 8903 Birmensdorf, Switzerland0000-0001-7495-842010.21105/joss.04398https://doi.org/10.5281/zenodo.6846969Python, Jupyter Notebookhttps://joss.theoj.org/papers/10.21105/joss.04398.pdf3D particle tracking, Fluid mechanics, Turbulence, Experimental methods